>UVH1_ARATH (Q9LKI5) DNA repair endonuclease UVH1 (EC 3.1.-.-) (Ultraviolet|
            hypersensitive 1) (AtRAD1) (DNA excision repair protein
            XP-F homolog)
          Length = 956

 Score = 86.3 bits (212), Expect = 3e-17
 Identities = 41/60 (68%), Positives = 52/60 (86%)
 Frame = -3

Query: 417  EFLRRLPGVTDSNYRAIMDGCNSLAELALLPVERLAELVGSQKGARTLKEFLDAKCPSMI 238
            EFLRRLPGV+D+NYR+IM+ C SLAELA LPVE LAEL+G  K A++L+EFLDAK P+++
Sbjct: 897  EFLRRLPGVSDANYRSIMEKCKSLAELASLPVETLAELMGGHKVAKSLREFLDAKYPTLL 956

>ERCC4_MOUSE (Q9QZD4) DNA repair endonuclease XPF (EC 3.1.-.-) (DNA excision|
            repair protein ERCC-4)
          Length = 906

 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 21/61 (34%), Positives = 37/61 (60%)
 Frame = -3

Query: 417  EFLRRLPGVTDSNYRAIMDGCNSLAELALLPVERLAELVGSQKGARTLKEFLDAKCPSMI 238
            +F+ ++PGV   N R++M+   ++AELA L +ERL  ++G    A+ L +FL      ++
Sbjct: 840  DFVLKMPGVNAKNCRSLMNQVKNIAELATLSLERLTTILGHSGNAKQLHDFLHTAYADLV 899

Query: 237  S 235
            S
Sbjct: 900  S 900

>ERCC4_HUMAN (Q92889) DNA repair endonuclease XPF (EC 3.1.-.-) (DNA excision|
            repair protein ERCC-4) (DNA-repair protein complementing
            XP-F cell) (Xeroderma pigmentosum group F complementing
            protein)
          Length = 905

 Score = 42.0 bits (97), Expect = 6e-04
 Identities = 19/61 (31%), Positives = 35/61 (57%)
 Frame = -3

Query: 417  EFLRRLPGVTDSNYRAIMDGCNSLAELALLPVERLAELVGSQKGARTLKEFLDAKCPSMI 238
            +FL ++PGV   N R++M    ++AELA L  + L  ++G+   A+ L +F+      ++
Sbjct: 839  DFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILGNAANAKQLYDFIHTSFAEVV 898

Query: 237  S 235
            S
Sbjct: 899  S 899

>ERCC4_CRIGR (Q9QYM7) DNA repair endonuclease XPF (EC 3.1.-.-) (DNA excision|
            repair protein ERCC-4)
          Length = 902

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 19/61 (31%), Positives = 35/61 (57%)
 Frame = -3

Query: 417  EFLRRLPGVTDSNYRAIMDGCNSLAELALLPVERLAELVGSQKGARTLKEFLDAKCPSMI 238
            +F+ ++PG+   N  ++M+   ++AELA L  ERL  ++G    A+ L +FL      ++
Sbjct: 836  DFVLKMPGINAKNCHSLMNHVKNIAELASLSQERLTSILGHAGNAKQLYDFLHTAYADVV 895

Query: 237  S 235
            S
Sbjct: 896  S 896

>UVRC_DEIRA (Q9RUN0) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 617

 Score = 36.6 bits (83), Expect = 0.025
 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
 Frame = -3

Query: 402 LPGVTDSNYRAIMDGCNSLAELALLPVERLAELVG-SQKGARTLKEFLDAK 253
           LPG+      A+++   SL +LA  PVE +A + G + + A+++KEFL A+
Sbjct: 558 LPGIGQKRRDALLEHFTSLEDLAAAPVEHIAAVPGMTLRAAQSVKEFLQAR 608

>MEI9_DROME (Q24087) Protein mei-9 (Protein meiotic 9)|
          Length = 961

 Score = 35.4 bits (80), Expect = 0.055
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = -3

Query: 417  EFLRRLPGVTDSNYRAIMDGCNSLAELALLPVERLAELVGSQKGARTLKEFL 262
            +FL RLPGV   N   ++    SL +L L   + L EL+ SQ+ A+ L + L
Sbjct: 866  DFLLRLPGVHTRNIHGLLRKGGSLRQLLLRSQKELEELLQSQESAKLLYDIL 917

>POLO_DROME (P52304) Serine/threonine-protein kinase polo (EC 2.7.11.21)|
          Length = 576

 Score = 32.3 bits (72), Expect = 0.47
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 44  GIGFGWNSTTQLTVLLTQCDIDYTSK*PSPTYLTSTAY 157
           GIG  +N TT+L +L  Q ++ +  K    TY+T+T Y
Sbjct: 412 GIGVMFNDTTKLILLPNQINVHFIDKDGKETYMTTTDY 449

>WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC146)|
          Length = 1336

 Score = 31.6 bits (70), Expect = 0.80
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = -2

Query: 412  PEKAPWRDGLQLQSDNGRMQ*PGGARAATGREASGAGGQPEGCPHAQGVSGCQVSQHD 239
            P K PW DG    S++  M+ PGG     G +  G  G  +  P +   S      HD
Sbjct: 1230 PRKRPWHDGPGT-SEHREMEAPGGPSEDRGGKGRGGPGPAQRVPKSGRSSSLDGEHHD 1286

>GLNE_YERPS (Q665V2) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)|
           ([Glutamate--ammonia-ligase] adenylyltransferase)
           (Glutamine-synthetase adenylyltransferase) (ATase)
          Length = 951

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -3

Query: 375 RAIMDGCNSLAELALLPVERLAELVGSQKGARTLKEFLDA 256
           RA++    ++AEL LLP +++A+L GS    R L+  L A
Sbjct: 347 RALLPTLQAVAELGLLPEQQVADLSGSYLFLRRLENLLQA 386

>GLNE_YERPE (Q8ZI61) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)|
           ([Glutamate--ammonia-ligase] adenylyltransferase)
           (Glutamine-synthetase adenylyltransferase) (ATase)
          Length = 951

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -3

Query: 375 RAIMDGCNSLAELALLPVERLAELVGSQKGARTLKEFLDA 256
           RA++    ++AEL LLP +++A+L GS    R L+  L A
Sbjct: 347 RALLPTLQAVAELGLLPEQQVADLSGSYLFLRRLENLLQA 386

>UVRC_THET8 (Q5SI32) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 590

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 411 LRRLPGVTDSNYRAIMDGCNSLAELALLPVERLAELVG-SQKGARTLKEFLDAKCPS 244
           L+ +PG+ +   R +++    L  L   P+E LA L G S + AR LK  L  + P+
Sbjct: 534 LQGIPGIGEKRRRLLLERYGGLRALKEAPLEELARLPGMSLEAARALKAALAEEEPA 590

>UNG_HHV11 (P10186) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)|
          Length = 334

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 412 PEKAPWRDGLQLQSDNGRMQ*PGGARAATGREASGAGGQPEGC 284
           P + P RDG   Q  +     PG +  A+     G+GG+P  C
Sbjct: 18  PRRTPPRDGTPPQKADADDPTPGASNDASTETRPGSGGEPAAC 60

>CO4A4_RABIT (P55787) Collagen alpha-4(IV) chain (Fragment)|
          Length = 623

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 343 GARAATGREASGAGGQPEGCPHAQGVSGCQ 254
           G R   GR  S     P GCP  QG+ G +
Sbjct: 44  GHRGPPGRPGSPGSSGPPGCPGGQGIPGLE 73

>LRC29_HUMAN (Q8WV35) Leucine-rich repeat-containing protein 29|
           (F-box/LRR-repeat protein 9) (F-box and leucine-rich
           repeat protein 9) (F-box protein FBL9)
          Length = 223

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 411 LRRLPGVTDSNYRAIMDGCNSLAELALLPVERLAE 307
           L  LP +TD+   A+  GC SL  LAL    RL++
Sbjct: 107 LSLLPELTDNGLVAVARGCPSLEHLALSHCSRLSD 141

>POLG_PYFV1 (Q05057) Genome polyprotein [Contains: Putative leader protein;|
           Coat protein 1 (22.5 kDa protein) (CP-1); Coat protein 2
           (26 kDa protein) (CP-2); Coat protein 3 (31 kDa protein)
           (CP-3); Putative helicase (EC 3.6.1.-) (Putative
           NTP-binding prot
          Length = 3027

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 22/66 (33%), Positives = 34/66 (51%)
 Frame = +3

Query: 36  TYLALDLDGIQLPN*QSSLHNVISITLANSLALLT*QVQRI*TPIVQRNSSSKTSLHLTR 215
           T  A D DGI++P    S+H  +S   +NS   L+    R+ TP+   + SS     L+ 
Sbjct: 505 TVFAKDSDGIKIPIEFMSIHKAVSAHDSNSHNALSRVEARVVTPLSHISLSSPV---LSI 561

Query: 216 TVEVDA 233
           T++V A
Sbjct: 562 TIQVFA 567

>RUVX_MYCTU (P67487) Putative Holliday junction resolvase (EC 3.1.-.-)|
          Length = 170

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -3

Query: 405 RLPGVTDSNYRAIMDGCNSLAELALLPVERLAELVGSQKGA 283
           R  GV  S  RA++D   ++A L     ERLA + G+Q+G+
Sbjct: 128 RQAGVRASEQRAVIDQAAAVAILQSWLDERLAAMAGTQEGS 168

>RUVX_MYCBO (P67488) Putative Holliday junction resolvase (EC 3.1.-.-)|
          Length = 170

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -3

Query: 405 RLPGVTDSNYRAIMDGCNSLAELALLPVERLAELVGSQKGA 283
           R  GV  S  RA++D   ++A L     ERLA + G+Q+G+
Sbjct: 128 RQAGVRASEQRAVIDQAAAVAILQSWLDERLAAMAGTQEGS 168

>IF2_STRAW (Q82K53) Translation initiation factor IF-2|
          Length = 1046

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 17/39 (43%), Positives = 17/39 (43%), Gaps = 9/39 (23%)
 Frame = -2

Query: 349 PGGARAATGREASGAGGQ---------PEGCPHAQGVSG 260
           PGGA A  G    GAGGQ         P G P  QG  G
Sbjct: 241 PGGAGAPGGPRPQGAGGQDRAPRPQGGPGGAPRPQGGPG 279

>BSN_RAT (O88778) Bassoon protein|
          Length = 3937

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -2

Query: 349  PGGARAATGREASGAGGQPEGCPHAQGVS 263
            PG A A TG    G  G P G P A+G S
Sbjct: 3877 PGPAGAKTGARPGGTPGAPAGQPAAEGES 3905


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,322,154
Number of Sequences: 219361
Number of extensions: 921474
Number of successful extensions: 2528
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2523
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)