ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl41c08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 62 2e-06
2gb|AC097627.1| Genomic sequence for Oryza sativa, Nipponbare str... 62 2e-06
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
4dbj|AK121880.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
5dbj|AK068556.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
6dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome 42 1.4
7ref|NM_123675.1| Arabidopsis thaliana RNA binding AT5G43090 mRNA... 40 5.6
8gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome... 40 5.6
9gb|AC124276.5| Homo sapiens chromosome 11, clone RP13-631K18, co... 40 5.6
10gb|AC122434.2| Mus musculus BAC clone RP24-198G2 from chromosome... 40 5.6
11emb|BX571876.1|BACPHGLE1 Leptospira biflexa temperate bacterioph... 40 5.6
12gb|AC025106.8| Homo sapiens chromosome 11, clone RP11-734D5, com... 40 5.6
13gb|BC102191.1| Bos taurus solute carrier family 39 (metal ion tr... 40 5.6
14dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
15dbj|AB008267.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.6
16gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 5.6
17gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.6
18ref|NM_001035102.1| Bos taurus solute carrier family 39 (metal i... 40 5.6 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 130/163 (79%)
 Strand = Plus / Minus

                                                                         
Query: 248   ggacacttggcatccagaaactccttgagcgtgcgggcacccttctggctgcccaccagc 307
             |||||||||||||| ||||| ||||||||| |||| || || |||||  | |||| || |
Sbjct: 49932 ggacacttggcatcgagaaattccttgagcatgcgtgcccctttctgagtacccatcaac 49873

                                                                         
Query: 308   tccgctagcctctctaccggtagcagcgcgagctccgccaggctattgcatccgtccatt 367
             || |  |||| ||||||||| ||||| || ||||| || | |||||||||| | ||||||
Sbjct: 49872 tcagacagccgctctaccggaagcagggccagctctgctaagctattgcattcctccatt 49813

                                                        
Query: 368   atcgctctgtagttggagtccgtcacgccagggagccttctca 410
             ||   ||| ||||| || || ||||| ||||| ||||| ||||
Sbjct: 49812 attcttctatagtttgaatctgtcacaccaggaagcctcctca 49770
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>gb|AC097627.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0079B22, from chromosome 3, complete sequence
          Length = 125217

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 130/163 (79%)
 Strand = Plus / Plus

                                                                         
Query: 248   ggacacttggcatccagaaactccttgagcgtgcgggcacccttctggctgcccaccagc 307
             |||||||||||||| ||||| ||||||||| |||| || || |||||  | |||| || |
Sbjct: 75286 ggacacttggcatcgagaaattccttgagcatgcgtgcccctttctgagtacccatcaac 75345

                                                                         
Query: 308   tccgctagcctctctaccggtagcagcgcgagctccgccaggctattgcatccgtccatt 367
             || |  |||| ||||||||| ||||| || ||||| || | |||||||||| | ||||||
Sbjct: 75346 tcagacagccgctctaccggaagcagggccagctctgctaagctattgcattcctccatt 75405

                                                        
Query: 368   atcgctctgtagttggagtccgtcacgccagggagccttctca 410
             ||   ||| ||||| || || ||||| ||||| ||||| ||||
Sbjct: 75406 attcttctatagtttgaatctgtcacaccaggaagcctcctca 75448
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
             complete sequence
          Length = 36192742

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 130/163 (79%)
 Strand = Plus / Minus

                                                                         
Query: 248   ggacacttggcatccagaaactccttgagcgtgcgggcacccttctggctgcccaccagc 307
             |||||||||||||| ||||| ||||||||| |||| || || |||||  | |||| || |
Sbjct: 49932 ggacacttggcatcgagaaattccttgagcatgcgtgcccctttctgagtacccatcaac 49873

                                                                         
Query: 308   tccgctagcctctctaccggtagcagcgcgagctccgccaggctattgcatccgtccatt 367
             || |  |||| ||||||||| ||||| || ||||| || | |||||||||| | ||||||
Sbjct: 49872 tcagacagccgctctaccggaagcagggccagctctgctaagctattgcattcctccatt 49813

                                                        
Query: 368   atcgctctgtagttggagtccgtcacgccagggagccttctca 410
             ||   ||| ||||| || || ||||| ||||| ||||| ||||
Sbjct: 49812 attcttctatagtttgaatctgtcacaccaggaagcctcctca 49770
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>dbj|AK121880.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033104L13, full
            insert sequence
          Length = 3178

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 130/163 (79%)
 Strand = Plus / Minus

                                                                        
Query: 248  ggacacttggcatccagaaactccttgagcgtgcgggcacccttctggctgcccaccagc 307
            |||||||||||||| ||||| ||||||||| |||| || || |||||  | |||| || |
Sbjct: 3022 ggacacttggcatcgagaaattccttgagcatgcgtgcccctttctgagtacccatcaac 2963

                                                                        
Query: 308  tccgctagcctctctaccggtagcagcgcgagctccgccaggctattgcatccgtccatt 367
            || |  |||| ||||||||| ||||| || ||||| || | |||||||||| | ||||||
Sbjct: 2962 tcagacagccgctctaccggaagcagggccagctctgctaagctattgcattcctccatt 2903

                                                       
Query: 368  atcgctctgtagttggagtccgtcacgccagggagccttctca 410
            ||   ||| ||||| || || ||||| ||||| ||||| ||||
Sbjct: 2902 attcttctatagtttgaatctgtcacaccaggaagcctcctca 2860
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>dbj|AK068556.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151H20, full
            insert sequence
          Length = 3118

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 130/163 (79%)
 Strand = Plus / Minus

                                                                        
Query: 248  ggacacttggcatccagaaactccttgagcgtgcgggcacccttctggctgcccaccagc 307
            |||||||||||||| ||||| ||||||||| |||| || || |||||  | |||| || |
Sbjct: 3029 ggacacttggcatcgagaaattccttgagcatgcgtgcccctttctgagtacccatcaac 2970

                                                                        
Query: 308  tccgctagcctctctaccggtagcagcgcgagctccgccaggctattgcatccgtccatt 367
            || |  |||| ||||||||| ||||| || ||||| || | |||||||||| | ||||||
Sbjct: 2969 tcagacagccgctctaccggaagcagggccagctctgctaagctattgcattcctccatt 2910

                                                       
Query: 368  atcgctctgtagttggagtccgtcacgccagggagccttctca 410
            ||   ||| ||||| || || ||||| ||||| ||||| ||||
Sbjct: 2909 attcttctatagtttgaatctgtcacaccaggaagcctcctca 2867
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>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome
          Length = 4202352

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 180    aactcctcttccaagacctca 200
              |||||||||||||||||||||
Sbjct: 780906 aactcctcttccaagacctca 780886
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>ref|NM_123675.1| Arabidopsis thaliana RNA binding AT5G43090 mRNA, complete cds
          Length = 1584

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 32   aatcacatatttggcattgg 51
            ||||||||||||||||||||
Sbjct: 1020 aatcacatatttggcattgg 1001
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>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0063D09
              map S1559, complete sequence
          Length = 190721

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 331    cagcgcgagctccgccaggc 350
              ||||||||||||||||||||
Sbjct: 136595 cagcgcgagctccgccaggc 136614
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>gb|AC124276.5| Homo sapiens chromosome 11, clone RP13-631K18, complete sequence
          Length = 195122

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 396  cagggagccttctcaggaac 415
            ||||||||||||||||||||
Sbjct: 1819 cagggagccttctcaggaac 1838
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>gb|AC122434.2| Mus musculus BAC clone RP24-198G2 from chromosome 8, complete sequence
          Length = 168940

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   ggacacttggcatccagaaa 267
             ||||||||||||||||||||
Sbjct: 32628 ggacacttggcatccagaaa 32647
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>emb|BX571876.1|BACPHGLE1 Leptospira biflexa temperate bacteriophage LE1
          Length = 73623

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    ttggatttggatggaattca 67
             ||||||||||||||||||||
Sbjct: 26499 ttggatttggatggaattca 26480
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>gb|AC025106.8| Homo sapiens chromosome 11, clone RP11-734D5, complete sequence
          Length = 190779

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 396   cagggagccttctcaggaac 415
             ||||||||||||||||||||
Sbjct: 51005 cagggagccttctcaggaac 51024
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>gb|BC102191.1| Bos taurus solute carrier family 39 (metal ion transporter), member
           5, mRNA (cDNA clone MGC:127070 IMAGE:7943216), complete
           cds
          Length = 1261

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 291 tctggctgcccaccagctcc 310
           ||||||||||||||||||||
Sbjct: 975 tctggctgcccaccagctcc 956
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 331     cagcgcgagctccgccaggc 350
               ||||||||||||||||||||
Sbjct: 3768923 cagcgcgagctccgccaggc 3768942
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>dbj|AB008267.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMG4
          Length = 79046

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 32    aatcacatatttggcattgg 51
             ||||||||||||||||||||
Sbjct: 42990 aatcacatatttggcattgg 42971
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 288     ccttctggctgcccaccagc 307
               ||||||||||||||||||||
Sbjct: 1844621 ccttctggctgcccaccagc 1844602
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 331     cagcgcgagctccgccaggc 350
               ||||||||||||||||||||
Sbjct: 3777617 cagcgcgagctccgccaggc 3777636
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>ref|NM_001035102.1| Bos taurus solute carrier family 39 (metal ion transporter), member
           5 (SLC39A5), mRNA
          Length = 1261

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 291 tctggctgcccaccagctcc 310
           ||||||||||||||||||||
Sbjct: 975 tctggctgcccaccagctcc 956


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,948,443
Number of Sequences: 3902068
Number of extensions: 2948443
Number of successful extensions: 47870
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47780
Number of HSP's gapped (non-prelim): 90
length of query: 419
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 397
effective length of database: 17,147,199,772
effective search space: 6807438309484
effective search space used: 6807438309484
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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