>YMJ8_CAEEL (P34483) Hypothetical protein F59B2.8|
          Length = 435

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +2

Query: 32  IKVCNQRMLQLLNDNWNSPRISVLNTHHYLRLGGREQQSRDIMFIGEKNNSY 187
           I +C++RM Q + D      I +    HYL LG   QQS  I F  E+   Y
Sbjct: 33  ISLCSKRMAQTVRD------IHITADLHYLTLGKDNQQSIQIQFKQEQKVIY 78

>VE2_HPV48 (Q80923) Regulatory protein E2|
          Length = 396

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = +2

Query: 89  RISVLNTHHYLRLGGREQQSRD---IMFIGEKNN--SYKTSCPADVAQQYI 226
           R + L  H Y RLG  ++++RD   ++F G++NN   ++  C    A  ++
Sbjct: 293 RSTTLARHGYSRLGRLQEEARDPPLVLFTGQQNNLKCWRNRCTTKYASLFL 343

>RUMA_ACIAD (Q6F847) 23S rRNA (uracil-5-)-methyltransferase rumA (EC 2.1.1.-)|
           (23S rRNA(M-5-U1939)-methyltransferase)
          Length = 463

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +2

Query: 206 DVAQQYIHH*QFYSTRMTRDLGFHLYTK----ILCC*PNRNNTFQIFSCLAD 349
           + AQ  +H+ +FYS  +T+D   H +       L   P R+  F+I   +A+
Sbjct: 353 NAAQNALHNVEFYSQDLTKDFSHHSWANQGFDALLIDPPRSGAFEIMHYIAN 404

>HIS82_ANAVT (Q3MAX6) Histidinol-phosphate aminotransferase 2 (EC 2.6.1.9)|
           (Imidazole acetol-phosphate transaminase 2)
          Length = 380

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 56  LQLLNDNWNSPRISVLNTHHYLRLGG 133
           LQL  DN NSP  ++LN H  L+  G
Sbjct: 321 LQLKTDNKNSPDTALLNLHQQLKNSG 346


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,114,654
Number of Sequences: 219361
Number of extensions: 1018039
Number of successful extensions: 2312
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2312
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)