Clone Name | rbastl41c05 |
---|---|
Clone Library Name | barley_pub |
>gb|AC158939.9| Mus musculus chromosome 5, clone RP23-204A8, complete sequence Length = 218847 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 388 gagcaaaatagaaaacaaaacc 409 |||||||||||||||||||||| Sbjct: 93648 gagcaaaatagaaaacaaaacc 93627
>emb|AL662914.8| Human DNA sequence from clone RP13-419C3 on chromosome X, complete sequence Length = 110403 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 173 aagaataacagctacaaaacat 194 |||||||||||||||||||||| Sbjct: 89662 aagaataacagctacaaaacat 89683
>gb|AC017089.3| Homo sapiens BAC clone RP11-500H5 from X, complete sequence Length = 178320 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 173 aagaataacagctacaaaacat 194 |||||||||||||||||||||| Sbjct: 108061 aagaataacagctacaaaacat 108040
>emb|CR931798.8| Mouse DNA sequence from clone RP23-89A4 on chromosome 4, complete sequence Length = 83980 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 374 atgaacaaaagaatgagcaaa 394 ||||||||||||||||||||| Sbjct: 44393 atgaacaaaagaatgagcaaa 44373
>gb|AC124715.4| Mus musculus BAC clone RP24-130P22 from chromosome 14, complete sequence Length = 178742 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 387 tgagcaaaatagaaaacaaaa 407 ||||||||||||||||||||| Sbjct: 58056 tgagcaaaatagaaaacaaaa 58036
>gb|AC093851.5| Homo sapiens chromosome 4 clone RP11-499N1, complete sequence Length = 200968 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 389 agcaaaatagaaaacaaaaccgtct 413 |||| |||||||||||||||||||| Sbjct: 95773 agcagaatagaaaacaaaaccgtct 95749
>emb|CR926468.3| Mouse DNA sequence from clone RP24-191A5 on chromosome 4, complete sequence Length = 129452 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 374 atgaacaaaagaatgagcaaa 394 ||||||||||||||||||||| Sbjct: 70622 atgaacaaaagaatgagcaaa 70602
>emb|BX511142.3| Zebrafish DNA sequence from clone CH211-69B22 in linkage group 14, complete sequence Length = 168322 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 364 ttaataaaagatgaacaaaag 384 ||||||||||||||||||||| Sbjct: 98896 ttaataaaagatgaacaaaag 98916
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 187 caaaacatcatgcccagctga 207 ||||||||||||||||||||| Sbjct: 3525773 caaaacatcatgcccagctga 3525753
>dbj|AP002801.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-875G18, complete sequence Length = 218651 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 134 agagaacagcaaagcagagat 154 ||||||||||||||||||||| Sbjct: 29028 agagaacagcaaagcagagat 29048
>emb|AL954823.1| Mouse DNA sequence from clone RP23-326I8 on chromosome 4, complete sequence Length = 50368 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 374 atgaacaaaagaatgagcaaa 394 ||||||||||||||||||||| Sbjct: 5976 atgaacaaaagaatgagcaaa 5996
>gb|AC168879.4| Mus musculus BAC clone RP24-407B6 from chromosome 13, complete sequence Length = 169877 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 agcaaaatagaaaacaaaac 408 |||||||||||||||||||| Sbjct: 142045 agcaaaatagaaaacaaaac 142064
>gb|AC118698.7| Mus musculus chromosome 1, clone RP24-82I5, complete sequence Length = 233783 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 atgaacaaaagaatgagcaa 393 |||||||||||||||||||| Sbjct: 41563 atgaacaaaagaatgagcaa 41582
>gb|AC130649.2| Drosophila melanogaster clone BACR06L03, complete sequence Length = 144234 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 gagcaaaatagaaaacaaaa 407 |||||||||||||||||||| Sbjct: 76455 gagcaaaatagaaaacaaaa 76474
>gb|AC018483.11| Drosophila melanogaster clone BACR11B22, complete sequence Length = 176595 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 gagcaaaatagaaaacaaaa 407 |||||||||||||||||||| Sbjct: 77584 gagcaaaatagaaaacaaaa 77565
>gb|AC158619.12| Mus musculus 10 BAC RP23-291O3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 250421 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 gttgctgaatgataactgga 80 |||||||||||||||||||| Sbjct: 231584 gttgctgaatgataactgga 231565
>ref|XM_454428.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E10571g predicted mRNA Length = 1101 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 aataggcttaataaaagatg 376 |||||||||||||||||||| Sbjct: 1051 aataggcttaataaaagatg 1070
>emb|CR626904.15| Zebrafish DNA sequence from clone DKEY-53D10 in linkage group 8, complete sequence Length = 203689 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 380 aaaagaatgagcaaaatagaaaacaaaa 407 ||||||| ||| |||||||||||||||| Sbjct: 78582 aaaagaaagagaaaaatagaaaacaaaa 78555
>emb|AL390774.10| Human DNA sequence from clone RP11-417B4 on chromosome 9 Contains part of the gene for a novel protein (KIAA1608), a novel gene, a LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) (LSM5) pseudogene and a phosphatidylinositol glycan, class F (PIGF) pseudogene, complete sequence Length = 197055 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 aaaaattctctgttgctaac 305 |||||||||||||||||||| Sbjct: 90591 aaaaattctctgttgctaac 90610
>emb|AL359980.9| Human DNA sequence from clone RP5-1027O15 on chromosome 11, complete sequence Length = 83218 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 aaagaatgagcaaaatagaa 400 |||||||||||||||||||| Sbjct: 32441 aaagaatgagcaaaatagaa 32422
>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2234072 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 aataggcttaataaaagatg 376 |||||||||||||||||||| Sbjct: 934371 aataggcttaataaaagatg 934352
>emb|AL034558.3|PFMAL3P2 Plasmodium falciparum MAL3P2, complete sequence Length = 158548 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 364 ttaataaaagatgaacaaaagaat 387 ||||||||| |||||||||||||| Sbjct: 88158 ttaataaaaaatgaacaaaagaat 88135
>gb|AC106849.5| Homo sapiens chromosome 11, clone CTD-2154J7, complete sequence Length = 81277 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 aaagaatgagcaaaatagaa 400 |||||||||||||||||||| Sbjct: 66117 aaagaatgagcaaaatagaa 66098
>gb|AC109779.6| Homo sapiens 3 BAC RP11-16J16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 89162 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 tttcatctttacacaaaaat 291 |||||||||||||||||||| Sbjct: 30932 tttcatctttacacaaaaat 30951
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 384 gaatgagcaaaatagaaaacaaaa 407 |||| ||||||||||||||||||| Sbjct: 1054056 gaattagcaaaatagaaaacaaaa 1054033
>gb|AC110058.4| Homo sapiens chromosome 11, clone CTD2-3012A18, complete sequence Length = 158915 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 aaagaatgagcaaaatagaa 400 |||||||||||||||||||| Sbjct: 40112 aaagaatgagcaaaatagaa 40131
>gb|AC104515.1| Drosophila melanogaster, chromosome X, region 20B-20C, BAC clone BACR27K09, complete sequence Length = 179386 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 gagcaaaatagaaaacaaaa 407 |||||||||||||||||||| Sbjct: 141065 gagcaaaatagaaaacaaaa 141084
>gb|AC099022.1| Drosophila melanogaster, chromosome 2L, region 23C-23D, BAC clone BACR48B06, complete sequence Length = 184554 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 atgaacaaaagaatgagcaa 393 |||||||||||||||||||| Sbjct: 82501 atgaacaaaagaatgagcaa 82482
>gb|AC159477.9| Mus musculus 10 BAC RP23-95I8 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 222553 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 gttgctgaatgataactgga 80 |||||||||||||||||||| Sbjct: 164034 gttgctgaatgataactgga 164053
>emb|AL603724.3|RN141K6 Rattus norvegicus chromosome 20 clone PAC RPCI-31-484K6 strain Brown Norway (BN/ssNHsd), RT1n haplotype Length = 94535 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 ttaataaaagatgaacaaaa 383 |||||||||||||||||||| Sbjct: 81700 ttaataaaagatgaacaaaa 81719
>gb|AC008321.7| Drosophila melanogaster, chromosome 2L, region 23D-23F, BAC clone BACR11E09, complete sequence Length = 169931 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 atgaacaaaagaatgagcaa 393 |||||||||||||||||||| Sbjct: 140865 atgaacaaaagaatgagcaa 140846
>gb|AC021699.5|AC021699 Homo sapiens chromosome 11, clone RP11-277B22, complete sequence Length = 163386 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 aaagaatgagcaaaatagaa 400 |||||||||||||||||||| Sbjct: 103667 aaagaatgagcaaaatagaa 103648
>gb|AC093721.3| Homo sapiens BAC clone CTD-2010B10 from 4, complete sequence Length = 128148 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 384 gaatgagcaaaatagaaaacaaaa 407 |||||||||| ||||||||||||| Sbjct: 58544 gaatgagcaagatagaaaacaaaa 58567
>gb|AC016908.5| Homo sapiens BAC clone RP11-457D4 from 2, complete sequence Length = 183515 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 ataaaagatgaacaaaagaa 386 |||||||||||||||||||| Sbjct: 122717 ataaaagatgaacaaaagaa 122736
>gb|AC006207.5| Homo sapiens 12 PAC RPCI3-488H23 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 109003 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 377 aacaaaagaatgagcaaaatagaaaaca 404 ||||||| |||||| ||||||||||||| Sbjct: 29181 aacaaaaaaatgagaaaaatagaaaaca 29208
>emb|BX648417.1|HSM808565 Homo sapiens mRNA; cDNA DKFZp686B17245 (from clone DKFZp686B17245) Length = 5757 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 377 aacaaaagaatgagcaaaatagaaaaca 404 ||||||| |||||| ||||||||||||| Sbjct: 1386 aacaaaaaaatgagaaaaatagaaaaca 1359
>gb|AE003788.5| Drosophila melanogaster chromosome 2R, section 1 of 73 of the complete sequence Length = 585533 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 gagcaaaatagaaaacaaaa 407 |||||||||||||||||||| Sbjct: 467532 gagcaaaatagaaaacaaaa 467551
>gb|AE003581.4| Drosophila melanogaster chromosome 2L, section 10 of 83 of the complete sequence Length = 314957 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 atgaacaaaagaatgagcaa 393 |||||||||||||||||||| Sbjct: 290808 atgaacaaaagaatgagcaa 290827
>gb|AE003574.6| Drosophila melanogaster chromosome X, section 73 of 74 of the complete sequence Length = 273468 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 gagcaaaatagaaaacaaaa 407 |||||||||||||||||||| Sbjct: 38559 gagcaaaatagaaaacaaaa 38540
>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome Length = 1751377 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 129 ggggcagagaacagcaaagcagag 152 ||||||||||||||||| |||||| Sbjct: 771729 ggggcagagaacagcaaggcagag 771752
>gb|AC173115.2| Mus musculus BAC clone RP23-26D2 from chromosome 13, complete sequence Length = 221491 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 agcaaaatagaaaacaaaac 408 |||||||||||||||||||| Sbjct: 196289 agcaaaatagaaaacaaaac 196270
>gb|AC173210.3| Mus musculus BAC clone RP23-29I5 from chromosome 13, complete sequence Length = 228881 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 agcaaaatagaaaacaaaac 408 |||||||||||||||||||| Sbjct: 171542 agcaaaatagaaaacaaaac 171561
>gb|CP000219.1| Drosophila melanogaster genomic scaffold 211000022280778 Length = 150125 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 gagcaaaatagaaaacaaaa 407 |||||||||||||||||||| Sbjct: 41005 gagcaaaatagaaaacaaaa 40986
>gb|AC004422.1|AC004422 Drosophila melanogaster (P1 DS08493 (D141)) DNA sequence, complete sequence Length = 77137 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 atgaacaaaagaatgagcaa 393 |||||||||||||||||||| Sbjct: 73830 atgaacaaaagaatgagcaa 73811 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,181,541 Number of Sequences: 3902068 Number of extensions: 5181541 Number of successful extensions: 119457 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 119312 Number of HSP's gapped (non-prelim): 145 length of query: 416 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 394 effective length of database: 17,147,199,772 effective search space: 6755996710168 effective search space used: 6755996710168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)