ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl41c03 |
|---|---|
| Clone Library Name | barley_pub |
>COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 870 Score = 57.0 bits (136), Expect = 2e-08 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Frame = -1 Query: 444 ENLAEAVSAVISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVRLSFGIS-GPKE 268 EN+ +AV + ILG+ PCE +D V HT LSGVF G VL + + + Sbjct: 788 ENIPDAVKKISEILGLVPCERSDRVPEGKTQHTVFLSGVFRGGYDVLSKATVAVDPNDNS 847 Query: 267 VAMKLAVRSDDPEVSDRI 214 +AM + ++S++P V+D + Sbjct: 848 IAMNIIIKSNEPLVADLV 865
>COPG2_HUMAN (Q9UBF2) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 55.5 bits (132), Expect = 7e-08 Identities = 29/70 (41%), Positives = 43/70 (61%) Frame = -1 Query: 444 ENLAEAVSAVISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVRLSFGISGPKEV 265 + L EAV+ +I+ LGMQPCE +D V N SH+ L+G+F G +LVR ++ V Sbjct: 792 KTLEEAVNNIITFLGMQPCERSDKVPENKNSHSLYLAGIFRGGYDLLVRSRLALA--DGV 849 Query: 264 AMKLAVRSDD 235 M++ VRS + Sbjct: 850 TMQVTVRSKE 859
>COPG2_MOUSE (Q9QXK3) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 54.7 bits (130), Expect = 1e-07 Identities = 29/70 (41%), Positives = 43/70 (61%) Frame = -1 Query: 444 ENLAEAVSAVISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVRLSFGISGPKEV 265 + L EAV+ +I+ LGMQPCE +D V N SH+ L+GV+ G +LVR ++ V Sbjct: 792 KTLEEAVNNIITFLGMQPCERSDKVPENKNSHSLYLAGVYRGGYDLLVRSRLALA--DGV 849 Query: 264 AMKLAVRSDD 235 M++ VRS + Sbjct: 850 TMQVTVRSKE 859
>COPG_HUMAN (Q9Y678) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 52.0 bits (123), Expect = 8e-07 Identities = 24/49 (48%), Positives = 32/49 (65%) Frame = -1 Query: 444 ENLAEAVSAVISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVR 298 + L EAV ++ LGM PCE +D V +N +HT LL+GVF G +LVR Sbjct: 795 KTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVR 843
>COPG_BOVIN (P53620) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 52.0 bits (123), Expect = 8e-07 Identities = 24/49 (48%), Positives = 32/49 (65%) Frame = -1 Query: 444 ENLAEAVSAVISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVR 298 + L EAV ++ LGM PCE +D V +N +HT LL+GVF G +LVR Sbjct: 795 KTLEEAVGNIVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVR 843
>NUGC_WHEAT (Q95H60) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 2.4 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -1 Query: 333 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 226 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_SACOF (Q6ENW0) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 2.4 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -1 Query: 333 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 226 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_SACHY (Q6L396) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 2.4 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -1 Query: 333 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 226 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_ORYSA (P12200) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 2.4 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -1 Query: 333 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 226 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_ORYNI (Q6ENH1) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 2.4 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -1 Query: 333 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 226 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_MAIZE (P19124) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 2.4 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -1 Query: 333 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 226 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>COPG_SCHPO (P87140) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 905 Score = 30.4 bits (67), Expect = 2.4 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 1/85 (1%) Frame = -1 Query: 444 ENLAEAVSAVISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVRLSFGISGPKE- 268 ++ S V +L MQP EGT+ + H LSG + KVL + S E Sbjct: 824 DSFRSTCSRVAELLQMQPLEGTE-NPTDKPVHVMKLSGKLVNGEKVLALVKMAHSKDGEG 882 Query: 267 VAMKLAVRSDDPEVSDRIHEIVANG 193 + +K+ R + SD E+V G Sbjct: 883 ITIKVIARGE----SDSSVELVVGG 903
>SLS1_YEAST (P42900) Sigma-like sequence protein 1, mitochondrial precursor| (Protein SLS1) Length = 643 Score = 29.6 bits (65), Expect = 4.1 Identities = 19/44 (43%), Positives = 26/44 (59%) Frame = +2 Query: 194 PFATISWILSLTSGSSDLTASFMATSFGPLIPNDSLTKTFTLPM 325 P +IS LS+T G S +ASF ++ F PLI ++K LPM Sbjct: 386 PSDSISQSLSITLGHSLQSASF-SSIFQPLIHKSFISKLLNLPM 428
>REXO3_YARLI (Q6CFE7) RNA exonuclease 3 (EC 3.1.-.-)| Length = 757 Score = 29.3 bits (64), Expect = 5.3 Identities = 19/57 (33%), Positives = 28/57 (49%) Frame = +2 Query: 194 PFATISWILSLTSGSSDLTASFMATSFGPLIPNDSLTKTFTLPMNTPESRQVCDLEL 364 PF T+S SL + +S T++ TS P+ TKT + P +TP L+L Sbjct: 466 PFRTVSTSESLDTSTSTSTSTSATTS----APSAKSTKTASRPASTPTKSLTSSLDL 518
>NUGC_SOYBN (P31174) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 158 Score = 29.3 bits (64), Expect = 5.3 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -1 Query: 333 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 226 G + +V L RL +GI P+EV +K+ V +P + Sbjct: 62 GGLLASVYHLTRLEYGIDQPEEVCIKIFVARKNPRI 97
>POL_IPMAI (P12894) Probable Pol polyprotein [Contains: Integrase (IN);| Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT)] Length = 814 Score = 28.5 bits (62), Expect = 9.1 Identities = 18/51 (35%), Positives = 23/51 (45%) Frame = +1 Query: 301 HQNFHITDEHT*KQASVRSRIVLDNIGSLARLHAKDAYNSTHSLSQVLPTP 453 H NFH+T E ++RSR SL R A+D S + LP P Sbjct: 516 HNNFHVTAE------TLRSRF------SLTRKEARDIVTQCQSCCEFLPVP 554
>RPOB_EUGGR (P23579) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1082 Score = 28.5 bits (62), Expect = 9.1 Identities = 17/52 (32%), Positives = 26/52 (50%) Frame = +2 Query: 206 ISWILSLTSGSSDLTASFMATSFGPLIPNDSLTKTFTLPMNTPESRQVCDLE 361 +S +L T+ S+LT + FGP N TK +NT + +VC +E Sbjct: 365 LSQLLDDTNSLSELTHKRKLSPFGPNGLNKERTKLDVREINTSQYGRVCPIE 416 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,932,813 Number of Sequences: 219361 Number of extensions: 1099581 Number of successful extensions: 2598 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2562 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2598 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
