ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl41c03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_477026.1| Oryza sativa (japonica cultivar-group), mRNA 287 2e-74
2dbj|AK100095.1| Oryza sativa (japonica cultivar-group) cDNA clon... 287 2e-74
3gb|BT017026.1| Zea mays clone EK07D2312G12.c mRNA sequence 252 9e-64
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 210 3e-51
5dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic D... 210 3e-51
6dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic D... 210 3e-51
7gb|BT017505.1| Zea mays clone EL01N0414H09.c mRNA sequence 200 3e-48
8ref|NM_187618.1| Oryza sativa (japonica cultivar-group), predic... 198 1e-47
9dbj|AK068454.1| Oryza sativa (japonica cultivar-group) cDNA clon... 198 1e-47
10gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 107 3e-20
11gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome... 107 3e-20
12dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
13gb|AY389774.1| Hyacinthus orientalis coatomer protein gamma subu... 68 3e-08
14gb|AY111369.1| Zea mays CL858_1 mRNA sequence 64 4e-07
15dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
16dbj|AP004665.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
17dbj|AP004564.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
18dbj|AP006864.1| Lotus japonicus genomic DNA, chromosome 3, clone... 42 1.6
19gb|AC129981.9| Mus musculus chromosome 5, clone RP23-114I13, com... 40 6.4
20gb|AY544051.1| Salmo salar clone Rsa473 microsatellite sequence 40 6.4
21gb|AC116324.6| Mus musculus BAC clone RP23-282P1 from 16, comple... 40 6.4
22gb|AC126722.7| Rattus norvegicus 4 BAC CH230-5L13 (Children's Ho... 40 6.4
23emb|BX321857.1| Nitrosomonas europaea ATCC 19718, complete genom... 40 6.4
24emb|BX294445.10| Zebrafish DNA sequence from clone DKEY-265K11 i... 40 6.4
25gb|BC091386.1| Rattus norvegicus hypothetical protein LOC310665,... 40 6.4
26gb|AC099065.2| Homo sapiens chromosome 1 clone RP11-105I12, comp... 40 6.4
27emb|BX323992.9| Zebrafish DNA sequence from clone DKEY-185B14 in... 40 6.4
28gb|AC008829.7| Homo sapiens chromosome 5 clone CTD-2140K22, comp... 40 6.4
29ref|NM_001025118.1| Rattus norvegicus hypothetical protein LOC31... 40 6.4
30gb|DQ067593.1| Cocksfoot streak virus isolate UK-1-04 GHCP619C H... 40 6.4
31gb|DQ067592.1| Cocksfoot streak virus isolate UK-1-04 GHCP619B H... 40 6.4
32gb|DQ067591.1| Cocksfoot streak virus isolate UK-1-04 GHCP619A H... 40 6.4
33dbj|AK031002.1| Mus musculus adult male thymus cDNA, RIKEN full-... 40 6.4
34emb|AL929238.22| Mouse DNA sequence from clone RP23-480I16 on ch... 40 6.4
35emb|BX248130.8| Zebrafish DNA sequence from clone CH211-236E5 in... 40 6.4
36gb|AC068129.6| Homo sapiens BAC clone RP11-619F9 from 2, complet... 40 6.4
37gb|AC016622.5|AC016622 Homo sapiens chromosome 5 clone CTD-2343F... 40 6.4
38gb|AC008833.5|AC008833 Homo sapiens chromosome 5 clone CTD-2146O... 40 6.4
39emb|AL953916.14| Zebrafish DNA sequence from clone CH211-246I7 i... 40 6.4
40emb|BX005450.9| Zebrafish DNA sequence from clone CH211-150O23, ... 40 6.4
41emb|BX119907.8| Zebrafish DNA sequence from clone CH211-208D14 i... 40 6.4
42emb|AL806515.7| Mouse DNA sequence from clone RP23-434M18 on chr... 40 6.4
43emb|CR854912.18| Zebrafish DNA sequence from clone DKEY-39O12 in... 40 6.4
44emb|BX914207.15| Zebrafish DNA sequence from clone DKEY-158P11 i... 40 6.4
45emb|CT025771.7| Zebrafish DNA sequence from clone DKEY-20I10 in ... 40 6.4
46emb|AL935150.10| Mouse DNA sequence from clone RP24-482A24 on ch... 40 6.4
47emb|AL845468.4| Mouse DNA sequence from clone RP23-67E6 on chrom... 40 6.4 
>ref|XM_477026.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3193

 Score =  287 bits (145), Expect = 2e-74
 Identities = 223/249 (89%)
 Strand = Plus / Minus

                                                                        
Query: 189  tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 248
            |||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||
Sbjct: 2900 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 2841

                                                                        
Query: 249  cagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaaaa 308
            | |||||||||||||||||||| ||||| ||||| | ||| ||||| || ||||| ||||
Sbjct: 2840 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 2781

                                                                        
Query: 309  ctttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgtttt 368
            |||||||||| ||||| |||||||| || |||||||||||||| || ||||||||| || 
Sbjct: 2780 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaattgcttg 2721

                                                                        
Query: 369  ggacaacatcggttccctcgcaaggctgcatgccaaggatgcttataacagcactcacag 428
            |||| ||||| ||||||||||| ||||||||||||||||||| ||| |||||||||||||
Sbjct: 2720 ggaccacatcagttccctcgcagggctgcatgccaaggatgcctatgacagcactcacag 2661

                     
Query: 429  cctcagcca 437
            |||||||||
Sbjct: 2660 cctcagcca 2652



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 1    ggttccaaatcaaccaaaaattgtt 25
            ||||||||||||| |||||||||||
Sbjct: 3095 ggttccaaatcaatcaaaaattgtt 3071
to top
>dbj|AK100095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004B12, full
            insert sequence
          Length = 3193

 Score =  287 bits (145), Expect = 2e-74
 Identities = 223/249 (89%)
 Strand = Plus / Minus

                                                                        
Query: 189  tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 248
            |||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||
Sbjct: 2900 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 2841

                                                                        
Query: 249  cagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaaaa 308
            | |||||||||||||||||||| ||||| ||||| | ||| ||||| || ||||| ||||
Sbjct: 2840 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 2781

                                                                        
Query: 309  ctttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgtttt 368
            |||||||||| ||||| |||||||| || |||||||||||||| || ||||||||| || 
Sbjct: 2780 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaattgcttg 2721

                                                                        
Query: 369  ggacaacatcggttccctcgcaaggctgcatgccaaggatgcttataacagcactcacag 428
            |||| ||||| ||||||||||| ||||||||||||||||||| ||| |||||||||||||
Sbjct: 2720 ggaccacatcagttccctcgcagggctgcatgccaaggatgcctatgacagcactcacag 2661

                     
Query: 429  cctcagcca 437
            |||||||||
Sbjct: 2660 cctcagcca 2652



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 1    ggttccaaatcaaccaaaaattgtt 25
            ||||||||||||| |||||||||||
Sbjct: 3095 ggttccaaatcaatcaaaaattgtt 3071
to top
>gb|BT017026.1| Zea mays clone EK07D2312G12.c mRNA sequence
          Length = 1125

 Score =  252 bits (127), Expect = 9e-64
 Identities = 242/279 (86%), Gaps = 1/279 (0%)
 Strand = Plus / Minus

                                                                       
Query: 187 gttttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatct 246
           |||||||||||| || |||||||| |||||||||||||||| ||| |||||||| |||||
Sbjct: 960 gttttagccattagcgacaatttcgtggatcctgtcactgatctctggatcatcagatct 901

                                                                       
Query: 247 gacagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaa 306
            || || |||||||||||||| || |||||  | || ||||||||||| |||||||||||
Sbjct: 900 aactgccagcttcatggccacctccttcggtgcactaattccaaatgacagtctcaccaa 841

                                                                       
Query: 307 aactttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgtt 366
            |||||||| || || || |||||||| || ||||| ||||||||||| || |||||| |
Sbjct: 840 gactttcacgttgccaataaacacaccagagagcagacaagtgtgcgaccttgaattgct 781

                                                                       
Query: 367 ttggacaacatcggttccctcgcaaggctgcatgccaaggatgcttataacagcactcac 426
           | |||| || || |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 780 tgggaccacgtcagttccctcacaaggctgcatgccaaggatgcttataacagcacttac 721

                                                  
Query: 427 agcctcagccaagttctccc-tacaccaagtccatactc 464
           ||||||||||||| |||||| ||| ||||| ||||||||
Sbjct: 720 agcctcagccaagctctcccttactccaagcccatactc 682
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  210 bits (106), Expect = 3e-51
 Identities = 175/198 (88%)
 Strand = Plus / Minus

                                                                           
Query: 189     tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 248
               |||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||
Sbjct: 5491408 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 5491349

                                                                           
Query: 249     cagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaaaa 308
               | |||||||||||||||||||| ||||| ||||| | ||| ||||| || ||||| ||||
Sbjct: 5491348 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 5491289

                                                                           
Query: 309     ctttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgtttt 368
               |||||||||| ||||| |||||||| || |||||||||||||| || ||||||||| || 
Sbjct: 5491288 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaattgcttg 5491229

                                 
Query: 369     ggacaacatcggttccct 386
               |||| ||||| |||||||
Sbjct: 5491228 ggaccacatcagttccct 5491211



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                     
Query: 384     cctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagcca 437
               ||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 5490995 cctcgcagggctgcatgccaaggatgcctatgacagcactcacagcctcagcca 5490942



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 1       ggttccaaatcaaccaaaaattgtt 25
               ||||||||||||| |||||||||||
Sbjct: 5491603 ggttccaaatcaatcaaaaattgtt 5491579
to top
>dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OSJNBa0081K20
          Length = 117287

 Score =  210 bits (106), Expect = 3e-51
 Identities = 175/198 (88%)
 Strand = Plus / Minus

                                                                        
Query: 189  tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 248
            |||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||
Sbjct: 4493 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 4434

                                                                        
Query: 249  cagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaaaa 308
            | |||||||||||||||||||| ||||| ||||| | ||| ||||| || ||||| ||||
Sbjct: 4433 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 4374

                                                                        
Query: 309  ctttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgtttt 368
            |||||||||| ||||| |||||||| || |||||||||||||| || ||||||||| || 
Sbjct: 4373 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaattgcttg 4314

                              
Query: 369  ggacaacatcggttccct 386
            |||| ||||| |||||||
Sbjct: 4313 ggaccacatcagttccct 4296



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                  
Query: 384  cctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagcca 437
            ||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 4080 cctcgcagggctgcatgccaaggatgcctatgacagcactcacagcctcagcca 4027



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 1    ggttccaaatcaaccaaaaattgtt 25
            ||||||||||||| |||||||||||
Sbjct: 4688 ggttccaaatcaatcaaaaattgtt 4664
to top
>dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0519E02
          Length = 139321

 Score =  210 bits (106), Expect = 3e-51
 Identities = 175/198 (88%)
 Strand = Plus / Minus

                                                                          
Query: 189    tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 248
              |||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||
Sbjct: 125389 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 125330

                                                                          
Query: 249    cagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaaaa 308
              | |||||||||||||||||||| ||||| ||||| | ||| ||||| || ||||| ||||
Sbjct: 125329 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 125270

                                                                          
Query: 309    ctttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgtttt 368
              |||||||||| ||||| |||||||| || |||||||||||||| || ||||||||| || 
Sbjct: 125269 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaattgcttg 125210

                                
Query: 369    ggacaacatcggttccct 386
              |||| ||||| |||||||
Sbjct: 125209 ggaccacatcagttccct 125192



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                    
Query: 384    cctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagcca 437
              ||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 124976 cctcgcagggctgcatgccaaggatgcctatgacagcactcacagcctcagcca 124923



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 1      ggttccaaatcaaccaaaaattgtt 25
              ||||||||||||| |||||||||||
Sbjct: 125584 ggttccaaatcaatcaaaaattgtt 125560
to top
>gb|BT017505.1| Zea mays clone EL01N0414H09.c mRNA sequence
          Length = 886

 Score =  200 bits (101), Expect = 3e-48
 Identities = 225/265 (84%), Gaps = 1/265 (0%)
 Strand = Plus / Minus

                                                                       
Query: 204 caatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttcatgg 263
           ||||||| |||||| ||||||||| ||| |||||||| ||||| || || || |||||||
Sbjct: 679 caatttcgtggatcttgtcactgagctctggatcatcagatctaactgccaggttcatgg 620

                                                                       
Query: 264 ccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacattaccga 323
           |||| || |||||  | ||||||||||| || ||||||||||| |||||||| || || |
Sbjct: 619 ccacctccttcggggcactgattccaaaggaaagtctcaccaagactttcacgttgccaa 560

                                                                       
Query: 324 tgaacacacctgaaagcaggcaagtgtgcgatctcgaattgttttggacaacatcggttc 383
           | | ||| || || ||||| ||||||||||| || |||||| || |||| || || || |
Sbjct: 559 taaccaccccagagagcagacaagtgtgcgaccttgaattgcttgggaccacgtcagtcc 500

                                                                       
Query: 384 cctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagccaagttct 443
           |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 499 cctcacaaggctgcatgccaaggatgcttataacagcacttacagcctcagccaagctct 440

                                    
Query: 444 ccc-tacaccaagtccatactcatc 467
           ||| ||| ||||| |||||||||||
Sbjct: 439 cccttactccaagcccatactcatc 415
to top
>ref|NM_187618.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2481

 Score =  198 bits (100), Expect = 1e-47
 Identities = 230/272 (84%), Gaps = 1/272 (0%)
 Strand = Plus / Minus

                                                                        
Query: 200  gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 259
            |||||||| || |||||| |||||||||| || ||||||||||| ||||| || ||||||
Sbjct: 2471 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 2412

                                                                        
Query: 260  atggccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacatta 319
            || |||||||| || |||||||| | |||||| ||||| || || | ||| ||  | |  
Sbjct: 2411 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 2352

                                                                        
Query: 320  ccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgttttggacaacatcg 379
            |||||||||||||| || |||||||||||||||||||| | ||| ||| | ||||| || 
Sbjct: 2351 ccgatgaacacaccagacagcaggcaagtgtgcgatcttgcattctttggtacaacctca 2292

                                                                        
Query: 380  gttccctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagccaag 439
            || ||||| ||||||||||| |||||||| || || ||||||||||||||||||||||||
Sbjct: 2291 gtgccctcacaaggctgcataccaaggatactaatgacagcactcacagcctcagccaag 2232

                                            
Query: 440  ttctccct-acaccaagtccatactcatcgac 470
             |||| || |||||||||||||||||||||||
Sbjct: 2231 ctctctctaacaccaagtccatactcatcgac 2200
to top
>dbj|AK068454.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155G01, full
            insert sequence
          Length = 3214

 Score =  198 bits (100), Expect = 1e-47
 Identities = 230/272 (84%), Gaps = 1/272 (0%)
 Strand = Plus / Minus

                                                                        
Query: 200  gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 259
            |||||||| || |||||| |||||||||| || ||||||||||| ||||| || ||||||
Sbjct: 2825 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 2766

                                                                        
Query: 260  atggccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacatta 319
            || |||||||| || |||||||| | |||||| ||||| || || | ||| ||  | |  
Sbjct: 2765 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 2706

                                                                        
Query: 320  ccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgttttggacaacatcg 379
            |||||||||||||| || |||||||||||||||||||| | ||| ||| | ||||| || 
Sbjct: 2705 ccgatgaacacaccagacagcaggcaagtgtgcgatcttgcattctttggtacaacctca 2646

                                                                        
Query: 380  gttccctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagccaag 439
            || ||||| ||||||||||| |||||||| || || ||||||||||||||||||||||||
Sbjct: 2645 gtgccctcacaaggctgcataccaaggatactaatgacagcactcacagcctcagccaag 2586

                                            
Query: 440  ttctccct-acaccaagtccatactcatcgac 470
             |||| || |||||||||||||||||||||||
Sbjct: 2585 ctctctctaacaccaagtccatactcatcgac 2554
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  107 bits (54), Expect = 3e-20
 Identities = 132/158 (83%)
 Strand = Plus / Minus

                                                                           
Query: 200     gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 259
               |||||||| || |||||| |||||||||| || ||||||||||| ||||| || ||||||
Sbjct: 6651732 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 6651673

                                                                           
Query: 260     atggccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacatta 319
               || |||||||| || |||||||| | |||||| ||||| || || | ||| ||  | |  
Sbjct: 6651672 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 6651613

                                                     
Query: 320     ccgatgaacacacctgaaagcaggcaagtgtgcgatct 357
               |||||||||||||| || ||||||||||||||||||||
Sbjct: 6651612 ccgatgaacacaccagacagcaggcaagtgtgcgatct 6651575



 Score =  103 bits (52), Expect = 5e-19
 Identities = 80/88 (90%), Gaps = 1/88 (1%)
 Strand = Plus / Minus

                                                                           
Query: 384     cctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagccaagttct 443
               |||| ||||||||||| |||||||| || || |||||||||||||||||||||||| |||
Sbjct: 6651423 cctcacaaggctgcataccaaggatactaatgacagcactcacagcctcagccaagctct 6651364

                                           
Query: 444     ccct-acaccaagtccatactcatcgac 470
               | || |||||||||||||||||||||||
Sbjct: 6651363 ctctaacaccaagtccatactcatcgac 6651336
to top
>gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1626B05,
             complete sequence
          Length = 127946

 Score =  107 bits (54), Expect = 3e-20
 Identities = 132/158 (83%)
 Strand = Plus / Minus

                                                                         
Query: 200   gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 259
             |||||||| || |||||| |||||||||| || ||||||||||| ||||| || ||||||
Sbjct: 37280 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 37221

                                                                         
Query: 260   atggccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacatta 319
             || |||||||| || |||||||| | |||||| ||||| || || | ||| ||  | |  
Sbjct: 37220 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 37161

                                                   
Query: 320   ccgatgaacacacctgaaagcaggcaagtgtgcgatct 357
             |||||||||||||| || ||||||||||||||||||||
Sbjct: 37160 ccgatgaacacaccagacagcaggcaagtgtgcgatct 37123



 Score =  103 bits (52), Expect = 5e-19
 Identities = 80/88 (90%), Gaps = 1/88 (1%)
 Strand = Plus / Minus

                                                                         
Query: 384   cctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagccaagttct 443
             |||| ||||||||||| |||||||| || || |||||||||||||||||||||||| |||
Sbjct: 36971 cctcacaaggctgcataccaaggatactaatgacagcactcacagcctcagccaagctct 36912

                                         
Query: 444   ccct-acaccaagtccatactcatcgac 470
             | || |||||||||||||||||||||||
Sbjct: 36911 ctctaacaccaagtccatactcatcgac 36884
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  107 bits (54), Expect = 3e-20
 Identities = 132/158 (83%)
 Strand = Plus / Minus

                                                                           
Query: 200     gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 259
               |||||||| || |||||| |||||||||| || ||||||||||| ||||| || ||||||
Sbjct: 6650945 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 6650886

                                                                           
Query: 260     atggccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacatta 319
               || |||||||| || |||||||| | |||||| ||||| || || | ||| ||  | |  
Sbjct: 6650885 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 6650826

                                                     
Query: 320     ccgatgaacacacctgaaagcaggcaagtgtgcgatct 357
               |||||||||||||| || ||||||||||||||||||||
Sbjct: 6650825 ccgatgaacacaccagacagcaggcaagtgtgcgatct 6650788



 Score =  103 bits (52), Expect = 5e-19
 Identities = 80/88 (90%), Gaps = 1/88 (1%)
 Strand = Plus / Minus

                                                                           
Query: 384     cctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagccaagttct 443
               |||| ||||||||||| |||||||| || || |||||||||||||||||||||||| |||
Sbjct: 6650636 cctcacaaggctgcataccaaggatactaatgacagcactcacagcctcagccaagctct 6650577

                                           
Query: 444     ccct-acaccaagtccatactcatcgac 470
               | || |||||||||||||||||||||||
Sbjct: 6650576 ctctaacaccaagtccatactcatcgac 6650549
to top
>gb|AY389774.1| Hyacinthus orientalis coatomer protein gamma subunit mRNA, partial
           cds
          Length = 871

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                       
Query: 371 acaacatcggttccctcgcaaggctgcatgccaaggatgcttataacagcactcacagcc 430
           ||||| || |||||||||||||||||||||||||||||| | |  |||||| ||||||| 
Sbjct: 736 acaacttcagttccctcgcaaggctgcatgccaaggatgttaacgacagcattcacagcg 677

                         
Query: 431 tcagccaagttctc 444
           ||| ||||| ||||
Sbjct: 676 tcaaccaagctctc 663
to top
>gb|AY111369.1| Zea mays CL858_1 mRNA sequence
          Length = 1437

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                        
Query: 203  acaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttcatg 262
            ||||| ||||| ||| | |||||||| || || ||||||||||| |||||||  ||||| 
Sbjct: 1194 acaatctcatgaatcttatcactgacttcagggtcatctgatctcacagctaatttcatt 1135

                                            
Query: 263  gccacttctttcggcccgctgattccaaatga 294
            |||||||| || |||||||| | |||||||||
Sbjct: 1134 gccacttcgttgggcccgctcagtccaaatga 1103



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 73/89 (82%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                        
Query: 383  ccctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagccaagttc 442
            ||||| || |||||||| ||||||||  | || |||||| | ||||||||||||||  | 
Sbjct: 1014 ccctcacacggctgcattccaaggatattaatgacagcattgacagcctcagccaaactt 955

                                         
Query: 443  tccct-acaccaagtccatactcatcgac 470
            || || || || |||||||||||||||||
Sbjct: 954  tctctaaccccgagtccatactcatcgac 926
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 139      tggaaagccaaaacaacaaaa 159
                |||||||||||||||||||||
Sbjct: 21750132 tggaaagccaaaacaacaaaa 21750112
to top
>dbj|AP004665.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0429B05
          Length = 155024

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 139   tggaaagccaaaacaacaaaa 159
             |||||||||||||||||||||
Sbjct: 29715 tggaaagccaaaacaacaaaa 29695
to top
>dbj|AP004564.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0479C12
          Length = 136799

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 139    tggaaagccaaaacaacaaaa 159
              |||||||||||||||||||||
Sbjct: 117702 tggaaagccaaaacaacaaaa 117682
to top
>dbj|AP006864.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT18I21, TM1144,
             complete sequence
          Length = 135217

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 148   aaaacaacaaaaaggtcaaccaaaa 172
             |||||||||||||||||||| ||||
Sbjct: 66692 aaaacaacaaaaaggtcaacaaaaa 66716
to top
>gb|AC129981.9| Mus musculus chromosome 5, clone RP23-114I13, complete sequence
          Length = 198469

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 288    caaatgatagtctcaccaaa 307
              ||||||||||||||||||||
Sbjct: 134144 caaatgatagtctcaccaaa 134163
to top
>gb|AY544051.1| Salmo salar clone Rsa473 microsatellite sequence
          Length = 1015

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 383 ccctcgcaaggctgcatgcc 402
           ||||||||||||||||||||
Sbjct: 252 ccctcgcaaggctgcatgcc 271
to top
>gb|AC116324.6| Mus musculus BAC clone RP23-282P1 from 16, complete sequence
          Length = 200774

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 297    gtctcaccaaaactttcaca 316
              ||||||||||||||||||||
Sbjct: 141172 gtctcaccaaaactttcaca 141153
to top
>gb|AC126722.7| Rattus norvegicus 4 BAC CH230-5L13 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 217690

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   aaaacaacaaaaaggtcaac 167
             ||||||||||||||||||||
Sbjct: 30996 aaaacaacaaaaaggtcaac 31015
to top
>emb|BX321857.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 2/10
          Length = 313050

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 143 aagccaaaacaacaaaaagg 162
           ||||||||||||||||||||
Sbjct: 565 aagccaaaacaacaaaaagg 584
to top
>emb|BX294445.10| Zebrafish DNA sequence from clone DKEY-265K11 in linkage group 1,
             complete sequence
          Length = 159780

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   acacacctgaaagcaggcaa 346
             ||||||||||||||||||||
Sbjct: 98857 acacacctgaaagcaggcaa 98876
to top
>gb|BC091386.1| Rattus norvegicus hypothetical protein LOC310665, mRNA (cDNA clone
           MGC:109471 IMAGE:7321358), complete cds
          Length = 2054

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 415 aacagcactcacagcctcag 434
           ||||||||||||||||||||
Sbjct: 950 aacagcactcacagcctcag 931
to top
>gb|AC099065.2| Homo sapiens chromosome 1 clone RP11-105I12, complete sequence
          Length = 181253

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 138    atggaaagccaaaacaacaaaaaggtcaaccaaaaa 173
              ||||||||| |||| || |||||||||||| |||||
Sbjct: 156807 atggaaagcaaaaaaaaaaaaaaggtcaactaaaaa 156842
to top
>emb|BX323992.9| Zebrafish DNA sequence from clone DKEY-185B14 in linkage group 12,
             complete sequence
          Length = 153572

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     caaatcaaccaaaaattgtt 25
             ||||||||||||||||||||
Sbjct: 48507 caaatcaaccaaaaattgtt 48488
to top
>gb|AC008829.7| Homo sapiens chromosome 5 clone CTD-2140K22, complete sequence
          Length = 159145

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     caaccaaaaattgttttact 30
              ||||||||||||||||||||
Sbjct: 143015 caaccaaaaattgttttact 143034
to top
>ref|NM_001025118.1| Rattus norvegicus hypothetical protein LOC310665 (LOC310665), mRNA
          Length = 2054

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 415 aacagcactcacagcctcag 434
           ||||||||||||||||||||
Sbjct: 950 aacagcactcacagcctcag 931
to top
>gb|DQ067593.1| Cocksfoot streak virus isolate UK-1-04 GHCP619C HC-Pro protein
            (HC-Pro) gene, partial cds
          Length = 1371

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 351  gcgatctcgaattgttttgg 370
            ||||||||||||||||||||
Sbjct: 1110 gcgatctcgaattgttttgg 1091
to top
>gb|DQ067592.1| Cocksfoot streak virus isolate UK-1-04 GHCP619B HC-Pro protein
            (HC-Pro) gene, partial cds
          Length = 1371

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 351  gcgatctcgaattgttttgg 370
            ||||||||||||||||||||
Sbjct: 1110 gcgatctcgaattgttttgg 1091
to top
>gb|DQ067591.1| Cocksfoot streak virus isolate UK-1-04 GHCP619A HC-Pro protein
            (HC-Pro) gene, partial cds
          Length = 1371

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 351  gcgatctcgaattgttttgg 370
            ||||||||||||||||||||
Sbjct: 1110 gcgatctcgaattgttttgg 1091
to top
>dbj|AK031002.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched
           library, clone:5830485N12 product:similar to Protein
           C20orf24 (Rab5-interacting protein) (RIP5) (PNAS-11)
           [Homo sapiens], full insert sequence
          Length = 2005

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 146 ccaaaacaacaaaaaggtca 165
           ||||||||||||||||||||
Sbjct: 906 ccaaaacaacaaaaaggtca 887
to top
>emb|AL929238.22| Mouse DNA sequence from clone RP23-480I16 on chromosome 2, complete
             sequence
          Length = 174226

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    agaaaaccaacttacacata 94
             ||||||||||||||||||||
Sbjct: 14949 agaaaaccaacttacacata 14968
to top
>emb|BX248130.8| Zebrafish DNA sequence from clone CH211-236E5 in linkage group 1,
              complete sequence
          Length = 183058

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 327    acacacctgaaagcaggcaa 346
              ||||||||||||||||||||
Sbjct: 145464 acacacctgaaagcaggcaa 145483
to top
>gb|AC068129.6| Homo sapiens BAC clone RP11-619F9 from 2, complete sequence
          Length = 150646

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   aacaacaaaaaggtcaacca 169
             ||||||||||||||||||||
Sbjct: 44400 aacaacaaaaaggtcaacca 44419
to top
>gb|AC016622.5|AC016622 Homo sapiens chromosome 5 clone CTD-2343F18, complete sequence
          Length = 110085

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    caaccaaaaattgttttact 30
             ||||||||||||||||||||
Sbjct: 74126 caaccaaaaattgttttact 74107
to top
>gb|AC008833.5|AC008833 Homo sapiens chromosome 5 clone CTD-2146O16, complete sequence
          Length = 141894

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    caaccaaaaattgttttact 30
             ||||||||||||||||||||
Sbjct: 98121 caaccaaaaattgttttact 98102
to top
>emb|AL953916.14| Zebrafish DNA sequence from clone CH211-246I7 in linkage group 12,
              complete sequence
          Length = 177468

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      caaatcaaccaaaaattgtt 25
              ||||||||||||||||||||
Sbjct: 107923 caaatcaaccaaaaattgtt 107942
to top
>emb|BX005450.9| Zebrafish DNA sequence from clone CH211-150O23, complete sequence
          Length = 164218

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 105    ataattaatcgaaatccctt 124
              ||||||||||||||||||||
Sbjct: 160378 ataattaatcgaaatccctt 160359
to top
>emb|BX119907.8| Zebrafish DNA sequence from clone CH211-208D14 in linkage group 6,
             complete sequence
          Length = 181060

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   aaaacaacaaaaaggtcaac 167
             ||||||||||||||||||||
Sbjct: 24478 aaaacaacaaaaaggtcaac 24459
to top
>emb|AL806515.7| Mouse DNA sequence from clone RP23-434M18 on chromosome X, complete
              sequence
          Length = 125394

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     caagaatgatgctgcaacaa 58
              ||||||||||||||||||||
Sbjct: 115520 caagaatgatgctgcaacaa 115539
to top
>emb|CR854912.18| Zebrafish DNA sequence from clone DKEY-39O12 in linkage group 6,
             complete sequence
          Length = 170067

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   aaaacaacaaaaaggtcaac 167
             ||||||||||||||||||||
Sbjct: 11246 aaaacaacaaaaaggtcaac 11265
to top
>emb|BX914207.15| Zebrafish DNA sequence from clone DKEY-158P11 in linkage group 4,
             complete sequence
          Length = 92140

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 413   ataacagcactcacagcctc 432
             ||||||||||||||||||||
Sbjct: 74498 ataacagcactcacagcctc 74517
to top
>emb|CT025771.7| Zebrafish DNA sequence from clone DKEY-20I10 in linkage group 13,
             complete sequence
          Length = 190607

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 413   ataacagcactcacagcctc 432
             ||||||||||||||||||||
Sbjct: 25665 ataacagcactcacagcctc 25684
to top
>emb|AL935150.10| Mouse DNA sequence from clone RP24-482A24 on chromosome 2, complete
             sequence
          Length = 163240

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 146   ccaaaacaacaaaaaggtca 165
             ||||||||||||||||||||
Sbjct: 91724 ccaaaacaacaaaaaggtca 91705
to top
>emb|AL845468.4| Mouse DNA sequence from clone RP23-67E6 on chromosome 2, complete
             sequence
          Length = 217609

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    caagaatgatgctgcaacaa 58
             ||||||||||||||||||||
Sbjct: 48422 caagaatgatgctgcaacaa 48441


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,937,103
Number of Sequences: 3902068
Number of extensions: 4937103
Number of successful extensions: 95898
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95666
Number of HSP's gapped (non-prelim): 227
length of query: 471
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 449
effective length of database: 17,147,199,772
effective search space: 7699092697628
effective search space used: 7699092697628
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top