ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl41c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VEIN_DROME (Q94918) Protein vein precursor (Epidermal growth fac... 29 2.9
2NU2C_MARPO (P06257) NAD(P)H-quinone oxidoreductase chain 2, chlo... 28 6.4
3METE_AQUAE (O67606) 5-methyltetrahydropteroyltriglutamate--homoc... 28 8.4
4BAI1_HUMAN (O14514) Brain-specific angiogenesis inhibitor 1 prec... 28 8.4

>VEIN_DROME (Q94918) Protein vein precursor (Epidermal growth factor-like|
           protein) (Protein defective dorsal discs)
          Length = 623

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 134 HMREWIISTNQNITPMKLQVILLWICLGTC 223
           H+R+W + T + + P+ L +I   + L TC
Sbjct: 5   HLRKWSLKTKKQLMPLILLIISYMLLLNTC 34



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>NU2C_MARPO (P06257) NAD(P)H-quinone oxidoreductase chain 2, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain 2)
           (NADH-plastoquinone oxidoreductase chain 2)
          Length = 501

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 119 KWTVFLSEKSLYSYLITLFVLRFSYKDSIVVSF 21
           K T++L   SL S LI++ +L F YK   ++SF
Sbjct: 38  KDTIWLYFISLTSLLISIIILLFQYKTDPIISF 70



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>METE_AQUAE (O67606) 5-methyltetrahydropteroyltriglutamate--homocysteine|
           methyltransferase (EC 2.1.1.14) (Methionine synthase,
           vitamin-B12 independent isozyme) (Cobalamin-independent
           methionine synthase)
          Length = 761

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +1

Query: 61  TNRVIKYEYKLFSERKTVHLIFVYPHAGMDNLYQPKYHTNEASGHLALDLPG 216
           T ++ + EYK F ++K  + I V    G+D L   ++  ++   + A+ L G
Sbjct: 452 TGKISEEEYKNFIKQKIKYAIEVQEDIGLDVLVHGEFERSDMVEYFAIKLDG 503



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>BAI1_HUMAN (O14514) Brain-specific angiogenesis inhibitor 1 precursor|
          Length = 1584

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 114 PFNLCIPTCGNG*SLPTKISHQ*SFRSSCSG 206
           P+++C  TCG G    T+     S+ + CSG
Sbjct: 362 PWSVCSSTCGEGWQTRTRFCVSSSYSTQCSG 392


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,561,270
Number of Sequences: 219361
Number of extensions: 642156
Number of successful extensions: 1046
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 80,573,946
effective HSP length: 51
effective length of database: 69,386,535
effective search space used: 1665276840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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