Clone Name | rbastl41b08 |
---|---|
Clone Library Name | barley_pub |
>MYOD_DROME (P22816) Myogenic-determination protein (Protein nautilus) (dMyd)| Length = 332 Score = 33.9 bits (76), Expect = 0.19 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 7/97 (7%) Frame = +2 Query: 47 FTKFTASATMSGSSAITAIYSITMSNARLLWQETRYYPQHRDNQ------PAGRATTDIR 208 F++F A S + A S S + + ++P D P+ TTD Sbjct: 59 FSRFNAVGDASAGNGGAASISANGSGSSCNYSHANHHPAELDKPLGMNMTPSPIYTTDYD 118 Query: 209 PEHKEAIHWCHVRTPCTGCSSSLRSTPAV-WECRGCK 316 E+ HV P CSS+ S P + W C+ CK Sbjct: 119 DENSSLSSEEHVLAPLV-CSSAQSSRPCLTWACKACK 154
>GRI22_VITVI (Q9M4H4) Ripening-related protein grip22 precursor| Length = 220 Score = 30.4 bits (67), Expect = 2.1 Identities = 16/39 (41%), Positives = 17/39 (43%) Frame = +3 Query: 90 PSPQSTASPCQTLACSGRKPVIILSTETTNQQAEPPLTS 206 P P ST P TLAC G KP PP+TS Sbjct: 72 PPPPSTCQPSGTLACKGGKP-------KNTYTCSPPITS 103
>HPH2_YEAST (P39734) Protein HPH2 (High pH protein 2) (Functionally related to| TCP1 protein 2) Length = 528 Score = 30.0 bits (66), Expect = 2.7 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 14/90 (15%) Frame = +1 Query: 31 YMDHSIYKIYSISYHVGFISHHRNLQHHHVKR-------------SLALAGNPLLSSAQR 171 Y D+ Y + S S F+ + L H +K +LA A +P+L + Sbjct: 179 YKDNDKYGLKSPSR--SFVKDKKRLVHRFLKSMEPSSSGQSKDSSALAPAFDPILPNVIS 236 Query: 172 QPTSRPSHH*HQT-RTQGSYTLVSCQNAVH 258 +P+ RP+HH H + + + T +S Q+ ++ Sbjct: 237 KPSKRPTHHSHSSDGSSSTQTDISLQSLLY 266
>CYSA2_RHIME (Q92VJ2) Sulfate/thiosulfate import ATP-binding protein cysA 2 (EC| 3.6.3.25) (Sulfate-transporting ATPase 2) Length = 367 Score = 28.9 bits (63), Expect = 6.0 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = +2 Query: 110 ITMSNARLLWQETRYYPQHRDNQPAGRATTDIRPEHKEAIHWC 238 +T++N + W E R N+P G AT RP E I C Sbjct: 245 VTLANGEI-WHEDRPIGLRAGNEPDGAATLYFRPHDVELIDGC 286
>PA26_TRIGA (P70088) Phospholipase A2 isozyme 6 precursor (EC 3.1.1.4)| (Phospholipase A2 isozyme VI) (Phosphatidylcholine 2-acylhydrolase) (PLA2-VI) Length = 138 Score = 28.9 bits (63), Expect = 6.0 Identities = 13/31 (41%), Positives = 15/31 (48%) Frame = -3 Query: 197 WWLGLLVGCLCAEDNNGFPARASERLTW*CC 105 WW G GC C + G P AS+R CC Sbjct: 35 WWYGSY-GCYCGKGGQGLPQDASDR----CC 60
>C78A1_MAIZE (P48420) Cytochrome P450 78A1 (EC 1.14.-.-) (CYPLXXVIII)| Length = 547 Score = 28.5 bits (62), Expect = 7.9 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 2/81 (2%) Frame = +2 Query: 35 WIILFTKFTASATMSGSSAITA--IYSITMSNARLLWQETRYYPQHRDNQPAGRATTDIR 208 W+ S T+ A+ A I+ T+S A L W + P G A T+ R Sbjct: 16 WVYALPALLGSDTLCAHPALLAGLIFLATVSVALLAWATS----------PGGPAWTNGR 65 Query: 209 PEHKEAIHWCHVRTPCTGCSS 271 + W V PC+ SS Sbjct: 66 GASASLLSWDPVVCPCSAASS 86
>CKI3_SCHPO (O74135) Casein kinase I homolog 3 (EC 2.7.11.1)| Length = 439 Score = 28.5 bits (62), Expect = 7.9 Identities = 18/57 (31%), Positives = 24/57 (42%) Frame = +3 Query: 60 QHQLPCRVHQPSPQSTASPCQTLACSGRKPVIILSTETTNQQAEPPLTSDQNTRKLY 230 Q Q P RV QP+PQ+T T+ QQA P S + +RK + Sbjct: 387 QQQQPQRVEQPAPQTTQ-----------------PTQVDTQQAAKPAPSKEKSRKKF 426
>MRS2_ASPFU (Q4WCV3) Inner membrane magnesium transporter mrs2, mitochondrial| precursor (RNA-splicing protein mrs2) Length = 597 Score = 28.5 bits (62), Expect = 7.9 Identities = 16/58 (27%), Positives = 23/58 (39%) Frame = +2 Query: 158 PQHRDNQPAGRATTDIRPEHKEAIHWCHVRTPCTGCSSSLRSTPAVWECRGCKGGSFS 331 P + ++ + T H+ + VRTP S S P +W C G G S S Sbjct: 49 PCNASSRASSTWTCTASAPHRTTLQTSLVRTPTPAARSHSSSRPRLWLCAGQAGRSSS 106
>OR1L1_HUMAN (Q8NH94) Olfactory receptor 1L1 (Olfactory receptor 9-C) (OR9-C)| Length = 310 Score = 28.5 bits (62), Expect = 7.9 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%) Frame = -1 Query: 256 ARRSD---MTPMYSFLVFWSDVSGGSACWLVVSVLRIITGFLPEQASV*HGDAV 104 A RSD TPMY FL S V C++ V + +++ FL E ++ +G+ + Sbjct: 48 AIRSDTRLQTPMYFFLSILSFVD---ICYVTVIIPKMLVNFLSETKTISYGECL 98 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,925,823 Number of Sequences: 219361 Number of extensions: 1314328 Number of successful extensions: 4239 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 4044 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4216 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)