ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl41b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MYOD_DROME (P22816) Myogenic-determination protein (Protein naut... 34 0.19
2GRI22_VITVI (Q9M4H4) Ripening-related protein grip22 precursor 30 2.1
3HPH2_YEAST (P39734) Protein HPH2 (High pH protein 2) (Functional... 30 2.7
4CYSA2_RHIME (Q92VJ2) Sulfate/thiosulfate import ATP-binding prot... 29 6.0
5PA26_TRIGA (P70088) Phospholipase A2 isozyme 6 precursor (EC 3.1... 29 6.0
6C78A1_MAIZE (P48420) Cytochrome P450 78A1 (EC 1.14.-.-) (CYPLXXV... 28 7.9
7CKI3_SCHPO (O74135) Casein kinase I homolog 3 (EC 2.7.11.1) 28 7.9
8MRS2_ASPFU (Q4WCV3) Inner membrane magnesium transporter mrs2, m... 28 7.9
9OR1L1_HUMAN (Q8NH94) Olfactory receptor 1L1 (Olfactory receptor ... 28 7.9

>MYOD_DROME (P22816) Myogenic-determination protein (Protein nautilus) (dMyd)|
          Length = 332

 Score = 33.9 bits (76), Expect = 0.19
 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
 Frame = +2

Query: 47  FTKFTASATMSGSSAITAIYSITMSNARLLWQETRYYPQHRDNQ------PAGRATTDIR 208
           F++F A    S  +   A  S   S +   +    ++P   D        P+   TTD  
Sbjct: 59  FSRFNAVGDASAGNGGAASISANGSGSSCNYSHANHHPAELDKPLGMNMTPSPIYTTDYD 118

Query: 209 PEHKEAIHWCHVRTPCTGCSSSLRSTPAV-WECRGCK 316
            E+       HV  P   CSS+  S P + W C+ CK
Sbjct: 119 DENSSLSSEEHVLAPLV-CSSAQSSRPCLTWACKACK 154



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>GRI22_VITVI (Q9M4H4) Ripening-related protein grip22 precursor|
          Length = 220

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = +3

Query: 90  PSPQSTASPCQTLACSGRKPVIILSTETTNQQAEPPLTS 206
           P P ST  P  TLAC G KP              PP+TS
Sbjct: 72  PPPPSTCQPSGTLACKGGKP-------KNTYTCSPPITS 103



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>HPH2_YEAST (P39734) Protein HPH2 (High pH protein 2) (Functionally related to|
           TCP1 protein 2)
          Length = 528

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 14/90 (15%)
 Frame = +1

Query: 31  YMDHSIYKIYSISYHVGFISHHRNLQHHHVKR-------------SLALAGNPLLSSAQR 171
           Y D+  Y + S S    F+   + L H  +K              +LA A +P+L +   
Sbjct: 179 YKDNDKYGLKSPSR--SFVKDKKRLVHRFLKSMEPSSSGQSKDSSALAPAFDPILPNVIS 236

Query: 172 QPTSRPSHH*HQT-RTQGSYTLVSCQNAVH 258
           +P+ RP+HH H +  +  + T +S Q+ ++
Sbjct: 237 KPSKRPTHHSHSSDGSSSTQTDISLQSLLY 266



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>CYSA2_RHIME (Q92VJ2) Sulfate/thiosulfate import ATP-binding protein cysA 2 (EC|
           3.6.3.25) (Sulfate-transporting ATPase 2)
          Length = 367

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 110 ITMSNARLLWQETRYYPQHRDNQPAGRATTDIRPEHKEAIHWC 238
           +T++N  + W E R       N+P G AT   RP   E I  C
Sbjct: 245 VTLANGEI-WHEDRPIGLRAGNEPDGAATLYFRPHDVELIDGC 286



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>PA26_TRIGA (P70088) Phospholipase A2 isozyme 6 precursor (EC 3.1.1.4)|
           (Phospholipase A2 isozyme VI) (Phosphatidylcholine
           2-acylhydrolase) (PLA2-VI)
          Length = 138

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 197 WWLGLLVGCLCAEDNNGFPARASERLTW*CC 105
           WW G   GC C +   G P  AS+R    CC
Sbjct: 35  WWYGSY-GCYCGKGGQGLPQDASDR----CC 60



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>C78A1_MAIZE (P48420) Cytochrome P450 78A1 (EC 1.14.-.-) (CYPLXXVIII)|
          Length = 547

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
 Frame = +2

Query: 35  WIILFTKFTASATMSGSSAITA--IYSITMSNARLLWQETRYYPQHRDNQPAGRATTDIR 208
           W+        S T+    A+ A  I+  T+S A L W  +          P G A T+ R
Sbjct: 16  WVYALPALLGSDTLCAHPALLAGLIFLATVSVALLAWATS----------PGGPAWTNGR 65

Query: 209 PEHKEAIHWCHVRTPCTGCSS 271
                 + W  V  PC+  SS
Sbjct: 66  GASASLLSWDPVVCPCSAASS 86



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>CKI3_SCHPO (O74135) Casein kinase I homolog 3 (EC 2.7.11.1)|
          Length = 439

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +3

Query: 60  QHQLPCRVHQPSPQSTASPCQTLACSGRKPVIILSTETTNQQAEPPLTSDQNTRKLY 230
           Q Q P RV QP+PQ+T                   T+   QQA  P  S + +RK +
Sbjct: 387 QQQQPQRVEQPAPQTTQ-----------------PTQVDTQQAAKPAPSKEKSRKKF 426



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>MRS2_ASPFU (Q4WCV3) Inner membrane magnesium transporter mrs2, mitochondrial|
           precursor (RNA-splicing protein mrs2)
          Length = 597

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = +2

Query: 158 PQHRDNQPAGRATTDIRPEHKEAIHWCHVRTPCTGCSSSLRSTPAVWECRGCKGGSFS 331
           P +  ++ +   T      H+  +    VRTP     S   S P +W C G  G S S
Sbjct: 49  PCNASSRASSTWTCTASAPHRTTLQTSLVRTPTPAARSHSSSRPRLWLCAGQAGRSSS 106



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>OR1L1_HUMAN (Q8NH94) Olfactory receptor 1L1 (Olfactory receptor 9-C) (OR9-C)|
          Length = 310

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -1

Query: 256 ARRSD---MTPMYSFLVFWSDVSGGSACWLVVSVLRIITGFLPEQASV*HGDAV 104
           A RSD    TPMY FL   S V     C++ V + +++  FL E  ++ +G+ +
Sbjct: 48  AIRSDTRLQTPMYFFLSILSFVD---ICYVTVIIPKMLVNFLSETKTISYGECL 98


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,925,823
Number of Sequences: 219361
Number of extensions: 1314328
Number of successful extensions: 4239
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4216
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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