ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl41b08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_450936.1| Oryza sativa (japonica cultivar-group), mRNA 131 2e-27
2ref|XM_450937.1| Oryza sativa (japonica cultivar-group), mRNA 131 2e-27
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 131 2e-27
4dbj|AP005676.3| Oryza sativa (japonica cultivar-group) genomic D... 131 2e-27
5dbj|AK122120.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 2e-27
6dbj|AK109479.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 5e-25
7gb|AY108179.1| Zea mays PCO089911 mRNA sequence 121 2e-24
8gb|AC104164.2| Homo sapiens chromosome 3 clone RP11-641C17, comp... 46 0.098
9gb|AF152363.1|AF152363 Homo sapiens constitutive fragile region ... 46 0.098
10gb|U66722.1|HSU66722 Human chromosome 3p14.2 fragile site FRA3B ... 46 0.098
11emb|AL136179.15| Human DNA sequence from clone RP3-322L4 on chro... 42 1.5
12emb|AJ329656.1|HSA329656 Homo sapiens genomic sequence surroundi... 42 1.5
13emb|AL160397.17| Human DNA sequence from clone RP11-83N23 on chr... 40 6.0
14gb|AC055717.36| Homo sapiens 12 BAC RP11-572C21 (Roswell Park Ca... 40 6.0
15dbj|AB127977.1| Buergeria buergeri mitochondrial DNA, complete g... 40 6.0
16gb|DQ209837.1| Maxillaria sp. Whitten 2904 atpB-rbcL intergenic ... 40 6.0
17emb|AL645794.12| Mouse DNA sequence from clone RP23-129E1 on chr... 40 6.0 
>ref|XM_450936.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2035

 Score =  131 bits (66), Expect = 2e-27
 Identities = 132/154 (85%)
 Strand = Plus / Minus

                                                                        
Query: 242  gtcagaacgccgtgcacaggttgctcttcaagtttgaggagcactcctgctgtatgggaa 301
            ||||||| ||||| || |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 1566 gtcagaatgccgtacagaggttgctcttcaagtttgaagagcattcctgctgtatgggaa 1507

                                                                        
Query: 302  tgccggggctgcaaaggcgggtccttttcggctctgatattctaacatgtgttattgccg 361
            || | ||| | || || ||  ||||||| ||||||||||| |||||||  |||||||| |
Sbjct: 1506 tggctgggttacacagccgactcctttttggctctgatatcctaacattcgttattgctg 1447

                                              
Query: 362  ctgtcaatgcgtcgactatgccacattcatcctg 395
            |||||| ||| || ||||| ||||||||||||||
Sbjct: 1446 ctgtcagtgcatcaactataccacattcatcctg 1413



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 150  gttattatcctcagcacagagaca 173
            ||||||||||||||| ||||||||
Sbjct: 1679 gttattatcctcagctcagagaca 1656
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>ref|XM_450937.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2059

 Score =  131 bits (66), Expect = 2e-27
 Identities = 132/154 (85%)
 Strand = Plus / Minus

                                                                        
Query: 242  gtcagaacgccgtgcacaggttgctcttcaagtttgaggagcactcctgctgtatgggaa 301
            ||||||| ||||| || |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 1740 gtcagaatgccgtacagaggttgctcttcaagtttgaagagcattcctgctgtatgggaa 1681

                                                                        
Query: 302  tgccggggctgcaaaggcgggtccttttcggctctgatattctaacatgtgttattgccg 361
            || | ||| | || || ||  ||||||| ||||||||||| |||||||  |||||||| |
Sbjct: 1680 tggctgggttacacagccgactcctttttggctctgatatcctaacattcgttattgctg 1621

                                              
Query: 362  ctgtcaatgcgtcgactatgccacattcatcctg 395
            |||||| ||| || ||||| ||||||||||||||
Sbjct: 1620 ctgtcagtgcatcaactataccacattcatcctg 1587



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 150  gttattatcctcagcacagagaca 173
            ||||||||||||||| ||||||||
Sbjct: 1853 gttattatcctcagctcagagaca 1830
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  131 bits (66), Expect = 2e-27
 Identities = 132/154 (85%)
 Strand = Plus / Plus

                                                                            
Query: 242      gtcagaacgccgtgcacaggttgctcttcaagtttgaggagcactcctgctgtatgggaa 301
                ||||||| ||||| || |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 17680407 gtcagaatgccgtacagaggttgctcttcaagtttgaagagcattcctgctgtatgggaa 17680466

                                                                            
Query: 302      tgccggggctgcaaaggcgggtccttttcggctctgatattctaacatgtgttattgccg 361
                || | ||| | || || ||  ||||||| ||||||||||| |||||||  |||||||| |
Sbjct: 17680467 tggctgggttacacagccgactcctttttggctctgatatcctaacattcgttattgctg 17680526

                                                  
Query: 362      ctgtcaatgcgtcgactatgccacattcatcctg 395
                |||||| ||| || ||||| ||||||||||||||
Sbjct: 17680527 ctgtcagtgcatcaactataccacattcatcctg 17680560



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 150      gttattatcctcagcacagagaca 173
                ||||||||||||||| ||||||||
Sbjct: 17680294 gttattatcctcagctcagagaca 17680317
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>dbj|AP005676.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1005_D12
          Length = 150588

 Score =  131 bits (66), Expect = 2e-27
 Identities = 132/154 (85%)
 Strand = Plus / Plus

                                                                          
Query: 242    gtcagaacgccgtgcacaggttgctcttcaagtttgaggagcactcctgctgtatgggaa 301
              ||||||| ||||| || |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 129129 gtcagaatgccgtacagaggttgctcttcaagtttgaagagcattcctgctgtatgggaa 129188

                                                                          
Query: 302    tgccggggctgcaaaggcgggtccttttcggctctgatattctaacatgtgttattgccg 361
              || | ||| | || || ||  ||||||| ||||||||||| |||||||  |||||||| |
Sbjct: 129189 tggctgggttacacagccgactcctttttggctctgatatcctaacattcgttattgctg 129248

                                                
Query: 362    ctgtcaatgcgtcgactatgccacattcatcctg 395
              |||||| ||| || ||||| ||||||||||||||
Sbjct: 129249 ctgtcagtgcatcaactataccacattcatcctg 129282



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 150    gttattatcctcagcacagagaca 173
              ||||||||||||||| ||||||||
Sbjct: 129016 gttattatcctcagctcagagaca 129039
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>dbj|AK122120.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033129G18, full
            insert sequence
          Length = 2035

 Score =  131 bits (66), Expect = 2e-27
 Identities = 132/154 (85%)
 Strand = Plus / Minus

                                                                        
Query: 242  gtcagaacgccgtgcacaggttgctcttcaagtttgaggagcactcctgctgtatgggaa 301
            ||||||| ||||| || |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 1566 gtcagaatgccgtacagaggttgctcttcaagtttgaagagcattcctgctgtatgggaa 1507

                                                                        
Query: 302  tgccggggctgcaaaggcgggtccttttcggctctgatattctaacatgtgttattgccg 361
            || | ||| | || || ||  ||||||| ||||||||||| |||||||  |||||||| |
Sbjct: 1506 tggctgggttacacagccgactcctttttggctctgatatcctaacattcgttattgctg 1447

                                              
Query: 362  ctgtcaatgcgtcgactatgccacattcatcctg 395
            |||||| ||| || ||||| ||||||||||||||
Sbjct: 1446 ctgtcagtgcatcaactataccacattcatcctg 1413



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 150  gttattatcctcagcacagagaca 173
            ||||||||||||||| ||||||||
Sbjct: 1679 gttattatcctcagctcagagaca 1656
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>dbj|AK109479.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-H01, full
            insert sequence
          Length = 2059

 Score =  123 bits (62), Expect = 5e-25
 Identities = 131/154 (85%)
 Strand = Plus / Minus

                                                                        
Query: 242  gtcagaacgccgtgcacaggttgctcttcaagtttgaggagcactcctgctgtatgggaa 301
            ||||||| ||||| || |||||||||||||||||||| |||||  |||||||||||||||
Sbjct: 1740 gtcagaatgccgtacagaggttgctcttcaagtttgaagagcatccctgctgtatgggaa 1681

                                                                        
Query: 302  tgccggggctgcaaaggcgggtccttttcggctctgatattctaacatgtgttattgccg 361
            || | ||| | || || ||  ||||||| ||||||||||| |||||||  |||||||| |
Sbjct: 1680 tggctgggttacacagccgactcctttttggctctgatatcctaacattcgttattgctg 1621

                                              
Query: 362  ctgtcaatgcgtcgactatgccacattcatcctg 395
            |||||| ||| || ||||| ||||||||||||||
Sbjct: 1620 ctgtcagtgcatcaactataccacattcatcctg 1587



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 150  gttattatcctcagcacagagaca 173
            ||||||||||||||| ||||||||
Sbjct: 1853 gttattatcctcagctcagagaca 1830
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>gb|AY108179.1| Zea mays PCO089911 mRNA sequence
          Length = 1203

 Score =  121 bits (61), Expect = 2e-24
 Identities = 148/177 (83%)
 Strand = Plus / Minus

                                                                       
Query: 237 gtcatgtcagaacgccgtgcacaggttgctcttcaagtttgaggagcactcctgctgtat 296
           |||| ||||||| |||||||| || ||  ||||||||||||| ||||| |||||||| ||
Sbjct: 903 gtcaggtcagaaagccgtgcaaagattattcttcaagtttgacgagcattcctgctgaat 844

                                                                       
Query: 297 gggaatgccggggctgcaaaggcgggtccttttcggctctgatattctaacatgtgttat 356
           || |||  ||||||| || || ||  | || || |||||||||||||||||| |||||||
Sbjct: 843 ggtaattgcggggctacagagccgacttctctttggctctgatattctaacacgtgttat 784

                                                                    
Query: 357 tgccgctgtcaatgcgtcgactatgccacattcatcctggtcctccgacctctggct 413
           ||| || | ||||||||| ||||||||||| |||||||| ||||| ||||| |||||
Sbjct: 783 tgctgccgccaatgcgtcaactatgccacactcatcctgatcctctgacctttggct 727
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>gb|AC104164.2| Homo sapiens chromosome 3 clone RP11-641C17, complete sequence
          Length = 197483

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 154   ttatcctcagcacagagacaacc 176
             |||||||||||||||||||||||
Sbjct: 84348 ttatcctcagcacagagacaacc 84370
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>gb|AF152363.1|AF152363 Homo sapiens constitutive fragile region FRA3B sequence
          Length = 185763

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 154 ttatcctcagcacagagacaacc 176
           |||||||||||||||||||||||
Sbjct: 593 ttatcctcagcacagagacaacc 571
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>gb|U66722.1|HSU66722 Human chromosome 3p14.2 fragile site FRA3B sequence
          Length = 110434

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 154    ttatcctcagcacagagacaacc 176
              |||||||||||||||||||||||
Sbjct: 107466 ttatcctcagcacagagacaacc 107444
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>emb|AL136179.15| Human DNA sequence from clone RP3-322L4 on chromosome 6 Contains the
             SOX4 gene for SRY (sex determining region Y)-box 4, a
             novel pseudogene and CpG islands, complete sequence
          Length = 128728

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 12    tctcaagatataaattagcta 32
             |||||||||||||||||||||
Sbjct: 53230 tctcaagatataaattagcta 53210
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>emb|AJ329656.1|HSA329656 Homo sapiens genomic sequence surrounding NotI site, clone
           NR1-QP21C
          Length = 664

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 278 aggagcactcctgctgtatgggaat 302
           ||||||||||||| |||||||||||
Sbjct: 437 aggagcactcctgttgtatgggaat 461
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>emb|AL160397.17| Human DNA sequence from clone RP11-83N23 on chromosome 13 Contains the
             5' end of the HTR2A gene for 5-hydroxytryptamine
             (serotonin) receptor 2A and a novel gene, complete
             sequence
          Length = 204056

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 213   aacacaaggaagctatacattggt 236
             |||||| |||||||||||||||||
Sbjct: 96468 aacacatggaagctatacattggt 96491
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>gb|AC055717.36| Homo sapiens 12 BAC RP11-572C21 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 204425

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 279    ggagcactcctgctgtatgggaat 302
              |||||||||||| |||||||||||
Sbjct: 132540 ggagcactcctgttgtatgggaat 132563
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>dbj|AB127977.1| Buergeria buergeri mitochondrial DNA, complete genome
          Length = 19959

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    atcattctatttacaaaatt 57
             ||||||||||||||||||||
Sbjct: 16278 atcattctatttacaaaatt 16297
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>gb|DQ209837.1| Maxillaria sp. Whitten 2904 atpB-rbcL intergenic spacer, partial
           sequence; chloroplast
          Length = 882

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 42  ttctatttacaaaatttaca 61
           ||||||||||||||||||||
Sbjct: 345 ttctatttacaaaatttaca 364
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>emb|AL645794.12| Mouse DNA sequence from clone RP23-129E1 on chromosome 2, complete
             sequence
          Length = 75020

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    atttacagcatcagctacca 74
             ||||||||||||||||||||
Sbjct: 32081 atttacagcatcagctacca 32100


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,556,694
Number of Sequences: 3902068
Number of extensions: 3556694
Number of successful extensions: 62614
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62550
Number of HSP's gapped (non-prelim): 57
length of query: 448
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 426
effective length of database: 17,147,199,772
effective search space: 7304707102872
effective search space used: 7304707102872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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