ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl41b07 |
|---|---|
| Clone Library Name | barley_pub |
>DMD_CAEEL (Q9TW65) Dystrophin-1| Length = 3674 Score = 30.4 bits (67), Expect = 1.0 Identities = 14/47 (29%), Positives = 22/47 (46%) Frame = +3 Query: 93 PTTPPKDSHPLAKEHGKTIESSKRNVTRMTRPLSATRSSGRVDRRSR 233 P TPP H + GK+ E S R + S+++ SG+ + R Sbjct: 279 PQTPPTAHHQAMLDRGKSFEQSAEGEVRSRKSSSSSQKSGKSKKARR 325
>VGP_MABVP (P35254) Structural glycoprotein precursor (Virion spike| glycoprotein) Length = 681 Score = 30.0 bits (66), Expect = 1.4 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Frame = +3 Query: 87 PKPTTPPKDSHPLAKEHGKTIESSKRNVTRMTR--PLSATRSSGRVDRRSRITSLCTPTL 260 P+P+TP ++ + G E +K N T P + T S ++ ++L ++ Sbjct: 300 PQPSTPQQEGNNTDHSQGTVTEPNKTNTTAQPSMPPHNTTAISTNNTSKNNFSTL---SV 356 Query: 261 QIANTNNFDNQ 293 + NT N+D Q Sbjct: 357 SLQNTTNYDTQ 367
>PRELP_MOUSE (Q9JK53) Prolargin precursor (Proline-arginine-rich end| leucine-rich repeat protein) Length = 378 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/53 (33%), Positives = 29/53 (54%) Frame = +1 Query: 13 LINSRVRKMDQPV*QTK*PLTTYNFQNQQHPQRTRILLQRNMEKLLSRQNVMS 171 L N+R+RK+DQ V K P + + + + L RN+E+L QN++S Sbjct: 129 LDNNRIRKVDQRV-LGKLPSLAFLYMEKNQLEEVPSALPRNLEQLRLSQNLIS 180
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 29.6 bits (65), Expect = 1.8 Identities = 22/63 (34%), Positives = 27/63 (42%) Frame = +3 Query: 66 TSYNL*FPKPTTPPKDSHPLAKEHGKTIESSKRNVTRMTRPLSATRSSGRVDRRSRITSL 245 TS L PKP P+ P +++ K K TRP S +RS R RSR S Sbjct: 241 TSDILKVPKPEPIPEPKEPSPEKNSK-----KEKEKEKTRPRSRSRSKSRSRTRSRSPSH 295 Query: 246 CTP 254 P Sbjct: 296 TRP 298
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 29.6 bits (65), Expect = 1.8 Identities = 22/63 (34%), Positives = 27/63 (42%) Frame = +3 Query: 66 TSYNL*FPKPTTPPKDSHPLAKEHGKTIESSKRNVTRMTRPLSATRSSGRVDRRSRITSL 245 TS L PKP P+ P +++ K K TRP S +RS R RSR S Sbjct: 241 TSDILKVPKPEPIPEPKEPSPEKNSK-----KEKEKEKTRPRSRSRSKSRSRTRSRSPSH 295 Query: 246 CTP 254 P Sbjct: 296 TRP 298
>MCM16_YEAST (Q12262) Central kinetochore subunit MCM16 (Minichromosome| maintenance protein 16) Length = 181 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = +3 Query: 84 FPKPTTPPKDSHPLAKEHGKTIESSKRNVT 173 FPKPT PP DS GK +E K N T Sbjct: 135 FPKPTIPPDDSDTA----GKQVEVEKENET 160
>CUPC4_CANPG (P81583) Cuticle protein CP1499 (CPCP1499)| Length = 148 Score = 28.9 bits (63), Expect = 3.0 Identities = 17/41 (41%), Positives = 22/41 (53%) Frame = +3 Query: 87 PKPTTPPKDSHPLAKEHGKTIESSKRNVTRMTRPLSATRSS 209 PKP PPK PLA + + S NV +T LSA R++ Sbjct: 28 PKPADPPKWYGPLASKIPAGLPGSSANVA-LTADLSAARNA 67
>AUXI_BOVIN (Q27974) Auxilin| Length = 910 Score = 28.9 bits (63), Expect = 3.0 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Frame = +3 Query: 84 FPKPTTPPKDSHPLAKEHGK-----TIESSKRNVTRMTRPLSATRSSGRVDRRSRITSLC 248 F P PP +S L+ G ++S + V + P T S+ RRS ++ Sbjct: 508 FSSPAAPPSNSELLSDLFGGGGAAGPVQSGQSGVDDVFHPSGPT-STQSTPRRSATSTSA 566 Query: 249 TPTLQIANTNNFD 287 +PTL++ FD Sbjct: 567 SPTLRVGEGATFD 579
>RFBX_SHIDY (Q03583) Putative O-antigen transporter| Length = 396 Score = 28.9 bits (63), Expect = 3.0 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%) Frame = -1 Query: 340 KSAWP---SAAASSVYTFF*LSKLLVLAIWRVGVHRDVILLRLSTLPELLVAESGLVIRV 170 K AWP S AA+SVYT+F +++L+ + D ++ + +L +A GL+I + Sbjct: 206 KEAWPFFLSLAATSVYTYF---NVILLSFYA----GDYVVANFNAADKLRMAAQGLLIPI 258
>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 272 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/34 (50%), Positives = 19/34 (55%) Frame = +3 Query: 141 KTIESSKRNVTRMTRPLSATRSSGRVDRRSRITS 242 K IE SKR+ +R S TRSS R RSR S Sbjct: 175 KLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRS 208
>NOP12_CANAL (Q5AHI7) Nucleolar protein 12| Length = 454 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Frame = +3 Query: 183 RPL-SATRSSGRVDRRSRITSLCTPTLQIANTNNFDNQKKVY 305 +PL + T+ GR R SR S P+L + N+FDNQKK + Sbjct: 330 KPLETGTQKKGRKLRISRAKSNAKPSLM--SPNHFDNQKKKF 369
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/56 (32%), Positives = 23/56 (41%) Frame = +3 Query: 87 PKPTTPPKDSHPLAKEHGKTIESSKRNVTRMTRPLSATRSSGRVDRRSRITSLCTP 254 P+P PK+ P E + + TRP S +RS R RSR S P Sbjct: 250 PEPVPEPKEPSP---------EKNSKKEKEKTRPRSRSRSKSRSRTRSRSPSHTRP 296
>HIS8_YERPE (Q8ZFX6) Histidinol-phosphate aminotransferase (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase) Length = 382 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = +3 Query: 231 RITSLCTPTLQIANTNNFDNQKKVYTELAA 320 R+ + P I N+NN DNQ K Y++ ++ Sbjct: 347 RVIAALAPLPGIDNSNNIDNQNKTYSQTSS 376
>IF2_STRAG (P0A3K7) Translation initiation factor IF-2| Length = 927 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/68 (27%), Positives = 30/68 (44%) Frame = +3 Query: 108 KDSHPLAKEHGKTIESSKRNVTRMTRPLSATRSSGRVDRRSRITSLCTPTLQIANTNNFD 287 K H +AKE GKT + + P+ + SS + +RI + + A TN+ Sbjct: 4 KRLHEIAKEIGKTSKEVVEQAQSLGLPVKSHASSVEENDATRIVESFSSSKTKAPTNSVQ 63 Query: 288 NQKKVYTE 311 + V TE Sbjct: 64 TNQGVKTE 71
>IF2_STRA5 (Q8E1H3) Translation initiation factor IF-2| Length = 927 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/68 (27%), Positives = 30/68 (44%) Frame = +3 Query: 108 KDSHPLAKEHGKTIESSKRNVTRMTRPLSATRSSGRVDRRSRITSLCTPTLQIANTNNFD 287 K H +AKE GKT + + P+ + SS + +RI + + A TN+ Sbjct: 4 KRLHEIAKEIGKTSKEVVEQAQSLGLPVKSHASSVEENDATRIVESFSSSKTKAPTNSVQ 63 Query: 288 NQKKVYTE 311 + V TE Sbjct: 64 TNQGVKTE 71
>IF2_STRA3 (P0A3K6) Translation initiation factor IF-2| Length = 927 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/68 (27%), Positives = 30/68 (44%) Frame = +3 Query: 108 KDSHPLAKEHGKTIESSKRNVTRMTRPLSATRSSGRVDRRSRITSLCTPTLQIANTNNFD 287 K H +AKE GKT + + P+ + SS + +RI + + A TN+ Sbjct: 4 KRLHEIAKEIGKTSKEVVEQAQSLGLPVKSHASSVEENDATRIVESFSSSKTKAPTNSVQ 63 Query: 288 NQKKVYTE 311 + V TE Sbjct: 64 TNQGVKTE 71
>IF2_STRA1 (Q3K302) Translation initiation factor IF-2| Length = 927 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/68 (27%), Positives = 30/68 (44%) Frame = +3 Query: 108 KDSHPLAKEHGKTIESSKRNVTRMTRPLSATRSSGRVDRRSRITSLCTPTLQIANTNNFD 287 K H +AKE GKT + + P+ + SS + +RI + + A TN+ Sbjct: 4 KRLHEIAKEIGKTSKEVVEQAQSLGLPVKSHASSVEENDATRIVESFSSSKTKAPTNSVQ 63 Query: 288 NQKKVYTE 311 + V TE Sbjct: 64 TNQGVKTE 71
>ATR_KLULA (Q6CT34) Serine/threonine-protein kinase MEC1 (EC 2.7.11.1)| (DNA-damage checkpoint kinase MEC1) (Mitosis entry checkpoint protein 1) (ATR homolog) Length = 2287 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = +2 Query: 29 YGKWTSQYDRLSNLLQLIISKTNNTPKGLAS 121 Y +W SQ+ +L LL ++ TN +AS Sbjct: 183 YRRWQSQFQKLMRLLAFVLKSTNEPSVEVAS 213
>FLIF_BUCAP (Q8KA45) Flagellar M-ring protein| Length = 556 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%) Frame = +2 Query: 179 DKTTFSNKKLRQS-*QTKQDNISVHAN 256 + TT+SNKK+++S Q QDN +H+N Sbjct: 331 NSTTYSNKKIKKSIIQNNQDNNILHSN 357
>WHRN_RAT (Q810W9) Whirlin (CASK-interacting protein CIP98)| Length = 920 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = +3 Query: 102 PPKDSHPLAKEHGKTIESSKRNVTRMTRPLSATRSSGRV 218 PP PLA+ H + + +++ V + PLS+ SG V Sbjct: 591 PPPPPPPLAQGHDRLLGQTRKPVREDSAPLSSAAHSGIV 629
>HSP7F_CANGA (Q6FJI3) Heat shock protein homolog SSE1| Length = 694 Score = 27.3 bits (59), Expect = 8.8 Identities = 13/52 (25%), Positives = 27/52 (51%) Frame = +3 Query: 87 PKPTTPPKDSHPLAKEHGKTIESSKRNVTRMTRPLSATRSSGRVDRRSRITS 242 P P P+D+ P KE KT++ +T T L+ + + +++ + +T+ Sbjct: 508 PLPEDAPEDAVPEVKEVTKTVKKDTLEITAHTFTLADDKLNTLIEKENDMTA 559
>ATL3D_ARATH (Q9SRM0) Probable RING-H2 finger protein ATL3D| Length = 158 Score = 27.3 bits (59), Expect = 8.8 Identities = 18/66 (27%), Positives = 30/66 (45%) Frame = -3 Query: 311 FCIHLFLIVKIVSVSNLEGWRAQRCYPASSVNSAGASCC*KWSCHSGDITF*RLNSFSMF 132 F + LF +V ++ L + + C P S+N +S C SG + + S + Sbjct: 35 FALALFSVVLFFALLTL--YIHRNCLPRDSINLHASSPDRLTRCRSGGLDPAEIRSLPVV 92 Query: 131 LCKRMR 114 LC+R R Sbjct: 93 LCRRER 98
>STAR7_HUMAN (Q9NQZ5) StAR-related lipid transfer protein 7 (StARD7) (START| domain-containing protein 7) (Protein GTT1) Length = 295 Score = 27.3 bits (59), Expect = 8.8 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%) Frame = -2 Query: 177 FG*HYVLTTQ*FFHVPLQEDASPLGVLLVLEIISCKRLL----SLSYWLVHFPYP 25 FG + +T + FF+V L + LV+++ +R + + +W+ HFPYP Sbjct: 93 FGTYTDVTPRQFFNVQLDTEYRKKWDALVIKLEVIERDVVSGSEVLHWVTHFPYP 147
>Y787_SYNY3 (Q55946) Hypothetical protein sll0787| Length = 322 Score = 27.3 bits (59), Expect = 8.8 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = -2 Query: 120 DASPLGVLLVLEIISCKRLLSLSYWLVHFP 31 + S G +L L+ ISC L WL+ FP Sbjct: 228 ETSKCGAILDLDAISCPAGLDFRQWLLSFP 257 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,111,123 Number of Sequences: 219361 Number of extensions: 1127900 Number of successful extensions: 3076 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2990 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3073 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
