ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl41b07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479398.1| Oryza sativa (japonica cultivar-group), mRNA 58 2e-05
2ref|XM_506533.1| PREDICTED Oryza sativa (japonica cultivar-group... 58 2e-05
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
4dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
5dbj|AK104043.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
6dbj|AK100911.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
7dbj|AK100264.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
8dbj|AK072927.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
9dbj|AB042102.1| Oryza sativa SEC31 mRNA, complete cds 58 2e-05
10gb|AY596611.1| Saccharum officinarum clone SCCCCL4015D05, comple... 54 4e-04
11gb|AC173452.3| Papio anubis clone RP41-379N3, complete sequence 42 1.4
12gb|AC159930.3| Papio anubis clone RP41-174M1, complete sequence 42 1.4
13gb|AC171175.1| Mus musculus chromosome 19, clone wi1-1715L8, com... 40 5.5
14gb|AC152065.4| Mus musculus BAC clone RP23-16D9 from chromosome ... 40 5.5
15gb|AC092129.3| Homo sapiens chromosome 16 clone RP11-140O8, comp... 40 5.5
16gb|AC140103.7| Medicago truncatula clone mth2-9i16, complete seq... 40 5.5
17gb|AE016828.2| Coxiella burnetii RSA 493, complete genome 40 5.5
18gb|AC117589.13| Mus musculus chromosome 18, clone RP23-222A8, co... 40 5.5
19emb|BX510315.6| Zebrafish DNA sequence from clone CH211-59I18 in... 40 5.5
20gb|AC162161.9| Medicago truncatula clone mth2-2g22, complete seq... 40 5.5
21gb|AC132623.4| Mus musculus BAC clone RP23-123N23 from chromosom... 40 5.5
22gb|AC121253.3| Homo sapiens chromosome 3 clone RP11-208G16, comp... 40 5.5
23gb|AE001439.1| Helicobacter pylori J99, complete genome 40 5.5
24emb|AL110479.1|CEY105C5B Caenorhabditis elegans YAC Y105C5B, com... 40 5.5
25gb|AC109616.9| Mus musculus chromosome 19, clone RP23-449C1, com... 40 5.5
26emb|AL928830.10| Zebrafish DNA sequence from clone CH211-119E16,... 40 5.5
27gb|AC149598.2| Mus musculus BAC clone RP24-119N9 from 18, comple... 40 5.5 
>ref|XM_479398.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3881

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                        
Query: 338  tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgatgagagccaaaagt 397
            |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 3465 tttacattctgaaattctgcctcgtcttgatcatacgcttcaatgcggcaagccagaagt 3406

                         
Query: 398  tgcactcgtccca 410
            |||||||||||||
Sbjct: 3405 tgcactcgtccca 3393



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 300  gtgtatacagaactagctgc 319
            ||||||||||||||||||||
Sbjct: 3500 gtgtatacagaactagctgc 3481
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>ref|XM_506533.1| PREDICTED Oryza sativa (japonica cultivar-group), P0047B07.120 mRNA
          Length = 3906

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                        
Query: 338  tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgatgagagccaaaagt 397
            |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 3527 tttacattctgaaattctgcctcgtcttgatcatacgcttcaatgcggcaagccagaagt 3468

                         
Query: 398  tgcactcgtccca 410
            |||||||||||||
Sbjct: 3467 tgcactcgtccca 3455



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 300  gtgtatacagaactagctgc 319
            ||||||||||||||||||||
Sbjct: 3562 gtgtatacagaactagctgc 3543
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                            
Query: 338      tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgatgagagccaaaagt 397
                |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 27611878 tttacattctgaaattctgcctcgtcttgatcatacgcttcaatgcggcaagccagaagt 27611819

                             
Query: 398      tgcactcgtccca 410
                |||||||||||||
Sbjct: 27611818 tgcactcgtccca 27611806



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 300      gtgtatacagaactagctgc 319
                ||||||||||||||||||||
Sbjct: 27611913 gtgtatacagaactagctgc 27611894
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>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0047B07
          Length = 157797

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                         
Query: 338   tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgatgagagccaaaagt 397
             |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 68871 tttacattctgaaattctgcctcgtcttgatcatacgcttcaatgcggcaagccagaagt 68812

                          
Query: 398   tgcactcgtccca 410
             |||||||||||||
Sbjct: 68811 tgcactcgtccca 68799



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   gtgtatacagaactagctgc 319
             ||||||||||||||||||||
Sbjct: 68906 gtgtatacagaactagctgc 68887
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>dbj|AK104043.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-C10, full
            insert sequence
          Length = 2030

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                        
Query: 338  tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgatgagagccaaaagt 397
            |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 1651 tttacattctgaaattctgcctcgtcttgatcatacgcttcaatgcggcaagccagaagt 1592

                         
Query: 398  tgcactcgtccca 410
            |||||||||||||
Sbjct: 1591 tgcactcgtccca 1579



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 300  gtgtatacagaactagctgc 319
            ||||||||||||||||||||
Sbjct: 1686 gtgtatacagaactagctgc 1667
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>dbj|AK100911.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132O04, full
            insert sequence
          Length = 3881

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                        
Query: 338  tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgatgagagccaaaagt 397
            |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 3465 tttacattctgaaattctgcctcgtcttgatcatacgcttcaatgcggcaagccagaagt 3406

                         
Query: 398  tgcactcgtccca 410
            |||||||||||||
Sbjct: 3405 tgcactcgtccca 3393



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 300  gtgtatacagaactagctgc 319
            ||||||||||||||||||||
Sbjct: 3500 gtgtatacagaactagctgc 3481
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>dbj|AK100264.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064J03, full
            insert sequence
          Length = 2226

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                        
Query: 338  tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgatgagagccaaaagt 397
            |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 1842 tttacattctgaaattctgcctcgtcttgatcatacgcttcaatgcggcaagccagaagt 1783

                         
Query: 398  tgcactcgtccca 410
            |||||||||||||
Sbjct: 1782 tgcactcgtccca 1770



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 300  gtgtatacagaactagctgc 319
            ||||||||||||||||||||
Sbjct: 1877 gtgtatacagaactagctgc 1858
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>dbj|AK072927.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H22, full
            insert sequence
          Length = 3905

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                        
Query: 338  tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgatgagagccaaaagt 397
            |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 3526 tttacattctgaaattctgcctcgtcttgatcatacgcttcaatgcggcaagccagaagt 3467

                         
Query: 398  tgcactcgtccca 410
            |||||||||||||
Sbjct: 3466 tgcactcgtccca 3454



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 300  gtgtatacagaactagctgc 319
            ||||||||||||||||||||
Sbjct: 3561 gtgtatacagaactagctgc 3542
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>dbj|AB042102.1| Oryza sativa SEC31 mRNA, complete cds
          Length = 3694

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                        
Query: 338  tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgatgagagccaaaagt 397
            |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 3283 tttacattctgaaattctgcctcgtcttgatcatacgcttcaatgcggcaagccagaagt 3224

                         
Query: 398  tgcactcgtccca 410
            |||||||||||||
Sbjct: 3223 tgcactcgtccca 3211



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 300  gtgtatacagaactagctgc 319
            ||||||||||||||||||||
Sbjct: 3318 gtgtatacagaactagctgc 3299
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>gb|AY596611.1| Saccharum officinarum clone SCCCCL4015D05, complete sequence
          Length = 1853

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                        
Query: 338  tttacactctgaagctttgccttgtcttgatcatgcgcttcaatgatgagagccaaaagt 397
            |||||| ||||||  | ||||| ||||||||||| ||||||||||  |  ||||| ||||
Sbjct: 1392 tttacattctgaaattctgcctcgtcttgatcatccgcttcaatgccgcaagccagaagt 1333

                           
Query: 398  tgcactcgtcccaat 412
            ||||||| |||||||
Sbjct: 1332 tgcactcatcccaat 1318
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>gb|AC173452.3| Papio anubis clone RP41-379N3, complete sequence
          Length = 93212

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 126   gcaaaggaacatggaaaaact 146
             |||||||||||||||||||||
Sbjct: 92089 gcaaaggaacatggaaaaact 92069
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>gb|AC159930.3| Papio anubis clone RP41-174M1, complete sequence
          Length = 163985

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 126  gcaaaggaacatggaaaaact 146
            |||||||||||||||||||||
Sbjct: 3477 gcaaaggaacatggaaaaact 3457
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>gb|AC171175.1| Mus musculus chromosome 19, clone wi1-1715L8, complete sequence
          Length = 37475

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   tttcagcaacaagaagctcc 209
             ||||||||||||||||||||
Sbjct: 32934 tttcagcaacaagaagctcc 32915
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>gb|AC152065.4| Mus musculus BAC clone RP23-16D9 from chromosome 12, complete sequence
          Length = 226392

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    ccaaaaccaacaacaccccc 106
             ||||||||||||||||||||
Sbjct: 42511 ccaaaaccaacaacaccccc 42492
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>gb|AC092129.3| Homo sapiens chromosome 16 clone RP11-140O8, complete sequence
          Length = 190333

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    ttacaacttataatttccaa 90
             ||||||||||||||||||||
Sbjct: 92131 ttacaacttataatttccaa 92150
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>gb|AC140103.7| Medicago truncatula clone mth2-9i16, complete sequence
          Length = 96937

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    acaacttataatttccaaaa 92
             ||||||||||||||||||||
Sbjct: 72245 acaacttataatttccaaaa 72264
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>gb|AE016828.2| Coxiella burnetii RSA 493, complete genome
          Length = 1995281

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 380     atgatgagagccaaaagttg 399
               ||||||||||||||||||||
Sbjct: 1313450 atgatgagagccaaaagttg 1313431
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>gb|AC117589.13| Mus musculus chromosome 18, clone RP23-222A8, complete sequence
          Length = 211309

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 277   acaattttgacaatcagaaaaagg 300
             ||||||||||| ||||||||||||
Sbjct: 89220 acaattttgactatcagaaaaagg 89243
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>emb|BX510315.6| Zebrafish DNA sequence from clone CH211-59I18 in linkage group 24,
             complete sequence
          Length = 202562

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 292   agaaaaaggtgtatacagaa 311
             ||||||||||||||||||||
Sbjct: 93535 agaaaaaggtgtatacagaa 93554
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>gb|AC162161.9| Medicago truncatula clone mth2-2g22, complete sequence
          Length = 109841

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    aatttccaaaaccaacaaca 101
             ||||||||||||||||||||
Sbjct: 59862 aatttccaaaaccaacaaca 59843
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>gb|AC132623.4| Mus musculus BAC clone RP23-123N23 from chromosome 12, complete
             sequence
          Length = 195885

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    ccaaaaccaacaacaccccc 106
             ||||||||||||||||||||
Sbjct: 49841 ccaaaaccaacaacaccccc 49860
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>gb|AC121253.3| Homo sapiens chromosome 3 clone RP11-208G16, complete sequence
          Length = 142193

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   aggaacatggaaaaactatt 149
             ||||||||||||||||||||
Sbjct: 27432 aggaacatggaaaaactatt 27451
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>gb|AE001439.1| Helicobacter pylori J99, complete genome
          Length = 1643831

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    catggaaaaactattgagtc 154
              ||||||||||||||||||||
Sbjct: 685442 catggaaaaactattgagtc 685461
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>emb|AL110479.1|CEY105C5B Caenorhabditis elegans YAC Y105C5B, complete sequence
          Length = 321304

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 275    taacaattttgacaatcaga 294
              ||||||||||||||||||||
Sbjct: 106710 taacaattttgacaatcaga 106691
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>gb|AC109616.9| Mus musculus chromosome 19, clone RP23-449C1, complete sequence
          Length = 167801

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 190    tttcagcaacaagaagctcc 209
              ||||||||||||||||||||
Sbjct: 139473 tttcagcaacaagaagctcc 139492
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>emb|AL928830.10| Zebrafish DNA sequence from clone CH211-119E16, complete sequence
          Length = 182614

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 292   agaaaaaggtgtatacagaa 311
             ||||||||||||||||||||
Sbjct: 75526 agaaaaaggtgtatacagaa 75545
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>gb|AC149598.2| Mus musculus BAC clone RP24-119N9 from 18, complete sequence
          Length = 161955

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 277   acaattttgacaatcagaaaaagg 300
             ||||||||||| ||||||||||||
Sbjct: 36475 acaattttgactatcagaaaaagg 36452


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,349,104
Number of Sequences: 3902068
Number of extensions: 3349104
Number of successful extensions: 63984
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63890
Number of HSP's gapped (non-prelim): 94
length of query: 412
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 390
effective length of database: 17,147,199,772
effective search space: 6687407911080
effective search space used: 6687407911080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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