ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl41b05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_507134.1| PREDICTED Oryza sativa (japonica cultivar-group... 80 1e-12
2ref|XM_480154.1| Oryza sativa (japonica cultivar-group), mRNA 80 1e-12
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 80 1e-12
4dbj|AP003940.3| Oryza sativa (japonica cultivar-group) genomic D... 80 1e-12
5dbj|AK099134.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 1e-12
6dbj|AK070325.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 1e-12
7emb|AL161630.12| Human DNA sequence from clone RP11-500B12 on ch... 42 0.32
8gb|AC107698.8| Mus musculus chromosome 1, clone RP24-496A5, comp... 40 1.3
9gb|AC101838.17| Mus musculus chromosome 1, clone RP23-242B14, co... 40 1.3
10emb|CT010582.12| Mouse DNA sequence from clone RP23-385M20 on ch... 40 1.3
11gb|AC100847.2| Homo sapiens chromosome 18, clone RP11-706P11, co... 38 5.0
12emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, ... 38 5.0
13emb|BX571871.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 38 5.0
14dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 38 5.0
15gb|AC098861.2| Homo sapiens BAC clone RP11-297J2 from 4, complet... 38 5.0
16gb|AC102106.14| Mus musculus chromosome 18, clone RP23-92B24, co... 38 5.0
17dbj|BS000200.1| Pan troglodytes chromosome 22 clone:PTB-035B21, ... 38 5.0
18gb|AY670701.1| Saccharum spontaneum clone PIN1 sucrose synthase ... 38 5.0 
>ref|XM_507134.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1066_B03.125 mRNA
          Length = 3327

 Score = 79.8 bits (40), Expect = 1e-12
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                        
Query: 1    tatatttgaaattaatccggtataaaatgaatgtccatcagttctcaacaagctaaaatt 60
            ||||||||| |||||| |||||||||||||||||||||  ||||||| | ||||||||||
Sbjct: 3303 tatatttgagattaattcggtataaaatgaatgtccattcgttctcagcgagctaaaatt 3244

                            
Query: 61   tgtcggcccaaatgca 76
              || |||||||||||
Sbjct: 3243 cctcagcccaaatgca 3228
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>ref|XM_480154.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3327

 Score = 79.8 bits (40), Expect = 1e-12
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                        
Query: 1    tatatttgaaattaatccggtataaaatgaatgtccatcagttctcaacaagctaaaatt 60
            ||||||||| |||||| |||||||||||||||||||||  ||||||| | ||||||||||
Sbjct: 3303 tatatttgagattaattcggtataaaatgaatgtccattcgttctcagcgagctaaaatt 3244

                            
Query: 61   tgtcggcccaaatgca 76
              || |||||||||||
Sbjct: 3243 cctcagcccaaatgca 3228
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 79.8 bits (40), Expect = 1e-12
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                           
Query: 1       tatatttgaaattaatccggtataaaatgaatgtccatcagttctcaacaagctaaaatt 60
               ||||||||| |||||| |||||||||||||||||||||  ||||||| | ||||||||||
Sbjct: 3136437 tatatttgagattaattcggtataaaatgaatgtccattcgttctcagcgagctaaaatt 3136378

                               
Query: 61      tgtcggcccaaatgca 76
                 || |||||||||||
Sbjct: 3136377 cctcagcccaaatgca 3136362
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>dbj|AP003940.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1066_B03
          Length = 115339

 Score = 79.8 bits (40), Expect = 1e-12
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                         
Query: 1     tatatttgaaattaatccggtataaaatgaatgtccatcagttctcaacaagctaaaatt 60
             ||||||||| |||||| |||||||||||||||||||||  ||||||| | ||||||||||
Sbjct: 95921 tatatttgagattaattcggtataaaatgaatgtccattcgttctcagcgagctaaaatt 95862

                             
Query: 61    tgtcggcccaaatgca 76
               || |||||||||||
Sbjct: 95861 cctcagcccaaatgca 95846
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>dbj|AK099134.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050E19, full
            insert sequence
          Length = 3326

 Score = 79.8 bits (40), Expect = 1e-12
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                        
Query: 1    tatatttgaaattaatccggtataaaatgaatgtccatcagttctcaacaagctaaaatt 60
            ||||||||| |||||| |||||||||||||||||||||  ||||||| | ||||||||||
Sbjct: 3302 tatatttgagattaattcggtataaaatgaatgtccattcgttctcagcgagctaaaatt 3243

                            
Query: 61   tgtcggcccaaatgca 76
              || |||||||||||
Sbjct: 3242 cctcagcccaaatgca 3227
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>dbj|AK070325.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050A13, full
            insert sequence
          Length = 3347

 Score = 79.8 bits (40), Expect = 1e-12
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                        
Query: 1    tatatttgaaattaatccggtataaaatgaatgtccatcagttctcaacaagctaaaatt 60
            ||||||||| |||||| |||||||||||||||||||||  ||||||| | ||||||||||
Sbjct: 3323 tatatttgagattaattcggtataaaatgaatgtccattcgttctcagcgagctaaaatt 3264

                            
Query: 61   tgtcggcccaaatgca 76
              || |||||||||||
Sbjct: 3263 cctcagcccaaatgca 3248
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>emb|AL161630.12| Human DNA sequence from clone RP11-500B12 on chromosome 9 Contains a
             novel gene, a ribosomal protein L35a (RPL35A) and a CpG
             island. pseudogene, complete sequence
          Length = 200970

 Score = 42.1 bits (21), Expect = 0.32
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 3     tatttgaaattaatccggtataaaa 27
             |||||||||||||||| ||||||||
Sbjct: 66460 tatttgaaattaatcctgtataaaa 66484
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>gb|AC107698.8| Mus musculus chromosome 1, clone RP24-496A5, complete sequence
          Length = 159888

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     gttctcaacaagctaaaatt 60
              ||||||||||||||||||||
Sbjct: 147046 gttctcaacaagctaaaatt 147027
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>gb|AC101838.17| Mus musculus chromosome 1, clone RP23-242B14, complete sequence
          Length = 178509

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 41     gttctcaacaagctaaaatt 60
              ||||||||||||||||||||
Sbjct: 177459 gttctcaacaagctaaaatt 177478
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>emb|CT010582.12| Mouse DNA sequence from clone RP23-385M20 on chromosome 14, complete
             sequence
          Length = 216611

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    aatgtccatcagttctcaac 49
             ||||||||||||||||||||
Sbjct: 45954 aatgtccatcagttctcaac 45973
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>gb|AC100847.2| Homo sapiens chromosome 18, clone RP11-706P11, complete sequence
          Length = 186784

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 22    ataaaatgaatgtccatca 40
             |||||||||||||||||||
Sbjct: 98007 ataaaatgaatgtccatca 97989
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>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 5      tttgaaattaatccggtataaaa 27
              |||||||||||||||||| ||||
Sbjct: 843478 tttgaaattaatccggtaaaaaa 843500
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>emb|BX571871.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
             13/17
          Length = 349944

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 5     tttgaaattaatccggtataaaa 27
             |||||||||||||||||| ||||
Sbjct: 16462 tttgaaattaatccggtaaaaaa 16440
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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 5       tttgaaattaatccggtataaaa 27
               |||||||||||||||||| ||||
Sbjct: 3446891 tttgaaattaatccggtaaaaaa 3446869
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>gb|AC098861.2| Homo sapiens BAC clone RP11-297J2 from 4, complete sequence
          Length = 185791

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 61     tgtcggcccaaatgcaaac 79
              |||||||||||||||||||
Sbjct: 136021 tgtcggcccaaatgcaaac 136039
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>gb|AC102106.14| Mus musculus chromosome 18, clone RP23-92B24, complete sequence
          Length = 230823

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 22    ataaaatgaatgtccatca 40
             |||||||||||||||||||
Sbjct: 42069 ataaaatgaatgtccatca 42051
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>dbj|BS000200.1| Pan troglodytes chromosome 22 clone:PTB-035B21, map 22, partial
             sequences, complete sequence
          Length = 31919

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 19    ggtataaaatgaatgtcca 37
             |||||||||||||||||||
Sbjct: 27755 ggtataaaatgaatgtcca 27737
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>gb|AY670701.1| Saccharum spontaneum clone PIN1 sucrose synthase 2 (Sus2) gene,
            partial cds
          Length = 3632

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 66   gcccaaatgcaaacacgag 84
            |||||||||||||||||||
Sbjct: 3177 gcccaaatgcaaacacgag 3195


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,059,683
Number of Sequences: 3902068
Number of extensions: 1059683
Number of successful extensions: 71358
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71282
Number of HSP's gapped (non-prelim): 76
length of query: 110
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 89
effective length of database: 17,151,101,840
effective search space: 1526448063760
effective search space used: 1526448063760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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