ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl41b02 |
|---|---|
| Clone Library Name | barley_pub |
>Y1629_HAEIN (P45280) Hypothetical protein HI1629| Length = 212 Score = 33.5 bits (75), Expect = 0.25 Identities = 19/50 (38%), Positives = 29/50 (58%) Frame = -2 Query: 224 FSQFGCTGLFFFRQMHGLPSMPFSLV*GDVRRVTVCRYGWVDFCSGSCTI 75 FSQ+G LF R + GL + P +V G RRV+ R+ +DFC+ ++ Sbjct: 119 FSQYGNRVLFVARFLPGLRA-PIYMVSGITRRVSYVRFVLIDFCAAIISV 167
>GBGT1_MOUSE (Q8VI38) Globoside alpha-1,3-N-acetylgalactosaminyltransferase 1| (EC 2.4.1.88) (Forssman glycolipid synthetase) Length = 347 Score = 31.6 bits (70), Expect = 0.93 Identities = 23/72 (31%), Positives = 29/72 (40%) Frame = +1 Query: 190 KKNKPVQPNCEKDYSQTDDQT*QPSPKWHEPVNSPSHEPLRCLLLAPCSVPTLQETTEEK 369 +K KP+QP + Y P PK E H P L L P P + E T + Sbjct: 53 RKEKPLQPVTQLQY---------PQPKLLE------HGPTELLTLTPWLAPIVSEGTFDP 97 Query: 370 HLKKCGQAPVNL 405 L K P+NL Sbjct: 98 ELLKSMYQPLNL 109
>YB35_SCHPO (O14340) Oxysterol-binding protein homolog C2F12.05c| Length = 1310 Score = 31.2 bits (69), Expect = 1.2 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 17/118 (14%) Frame = +1 Query: 79 VHEPLQKSTH---PYLQTVTRRTSPHTKENGIEGKPCIC---------RKKNKPVQPNCE 222 + EP S H P L+T T +SP TK+N + + R+ N P+ + Sbjct: 593 IREPSFSSEHKPQPSLKTTTDVSSPETKQNIADIRKTTLTDQTEEFTERRDNNGSIPSKQ 652 Query: 223 KDYSQTDDQT*QPSPK-----WHEPVNSPSHEPLRCLLLAPCSVPTLQETTEEKHLKK 381 Q + PS + H + PS +P S+P+ Q+TTE KHL+K Sbjct: 653 PSDEQHLGKESLPSQQSTVSNHHRKESIPSKQPTEGQHARQESLPS-QQTTETKHLRK 709
>NU4M_APILI (P34853) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 447 Score = 30.4 bits (67), Expect = 2.1 Identities = 21/82 (25%), Positives = 43/82 (52%) Frame = -1 Query: 288 VDWFMPFRTWLSGLIISLRVVLLTVWLHGLVFFPADAWLALNAIFLGMRRRPTCNCLQIW 109 +DW F LS + S +++LT+W+ GL+F + +LN +F+ + + + + Sbjct: 54 IDWIYIFCN-LSFNMYSYGLIMLTLWIFGLIFISLNN-NSLNCLFMNLLLMISLLLVFLS 111 Query: 108 MG*FLQWLMYYCGHRYIIVVFF 43 M L +L Y G ++++F+ Sbjct: 112 MNLLLFYLFYEFG---LLLIFY 130
>R1AB_CVPPU (Q9IW06) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; Unknown protein 1; 3C-like Length = 6684 Score = 30.0 bits (66), Expect = 2.7 Identities = 17/66 (25%), Positives = 30/66 (45%) Frame = +2 Query: 113 ICKQLHVGRLLIPRKMALRASHASAGKKTSPCSQTVRRTTRKLMIKPDNQVRNGMNQSTH 292 +C+ L+ L +P KM + A+ +P S +RR I DN +R+ ++ + Sbjct: 6433 LCQYLNTTTLCVPHKMRVLHLGAAGASGVAPGSTVLRRWLPDDAILVDNDLRDYVSDADF 6492 Query: 293 PVMSHC 310 V C Sbjct: 6493 SVTGDC 6498
>MICA2_HUMAN (O94851) Protein MICAL-2| Length = 1124 Score = 30.0 bits (66), Expect = 2.7 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 4/80 (5%) Frame = +1 Query: 40 SKEYNNNVSVSTIVHEPLQK----STHPYLQTVTRRTSPHTKENGIEGKPCICRKKNKPV 207 SKE N V ++ ++ L K + +P L RR S GI GKP +C PV Sbjct: 706 SKEGGNQNKVKSMANQLLAKFEESTRNPSLMKQERRVS------GI-GKPVLCSSSGPPV 758 Query: 208 QPNCEKDYSQTDDQT*QPSP 267 C K ++ T PSP Sbjct: 759 HSCCPK----PEEATPSPSP 774
>R1AB_CVPFS (P18457) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p41; Unknown protein 3] (Fragment) Length = 533 Score = 30.0 bits (66), Expect = 2.7 Identities = 17/66 (25%), Positives = 30/66 (45%) Frame = +2 Query: 113 ICKQLHVGRLLIPRKMALRASHASAGKKTSPCSQTVRRTTRKLMIKPDNQVRNGMNQSTH 292 +C+ L+ L +P KM + A+ +P S +RR I DN +R+ ++ + Sbjct: 282 LCQYLNTTTLCVPHKMRVLHLGAAGASGVAPGSTVLRRWLPDDAILVDNDLRDYVSDADF 341 Query: 293 PVMSHC 310 V C Sbjct: 342 SVTGDC 347
>RP1_BOVIN (Q8MJ05) Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein| homolog) Length = 2105 Score = 29.3 bits (64), Expect = 4.6 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%) Frame = +2 Query: 170 ASHASAGKKTSPCSQTVRRTTRKLMIKPDN-QVRNGM----NQSTHPVMSHC 310 +SH S+GK+ Q+ R TT+ + DN R GM N S + HC Sbjct: 954 SSHTSSGKRNDSILQSNRHTTKSASLTGDNLGKRVGMSFDKNSSEELIQDHC 1005
>Y3474_PSEAE (O68826) Hypothetical membrane protein PA3474| Length = 286 Score = 29.3 bits (64), Expect = 4.6 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = -1 Query: 261 WLSGLIISLRVVLLTVWLHGLVFFPADAWLALNAIFLG 148 +L+G + S VL V L GLVF P W + F+G Sbjct: 21 YLAGQVDSYFAVLTRVLLAGLVFLPLTRWRGVEPRFVG 58
>STP2_PANTR (Q9N1A7) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)| Length = 133 Score = 29.3 bits (64), Expect = 4.6 Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 8/106 (7%) Frame = +1 Query: 76 IVHEPLQKSTHPYLQTVTRRTSPHTKENGIEGKPCICRKKNKPVQPNCEKDYS------- 234 I H L ++ P T TR T C R ++ P ++ + Sbjct: 10 ITHTQLHSNSQPQSCTCTRHRQ--TFSQSCRQSHCGSRSRSSSQSPASHRNPTGAHSSSG 67 Query: 235 -QTDDQT*QPSPKWHEPVNSPSHEPLRCLLLAPCSVPTLQETTEEK 369 Q+ P PK H+ + H P+R +L CS P ++ E K Sbjct: 68 HQSQSPNTSPPPKRHKKTMNSHHSPMRPTIL-HCSCPKNRKNLEGK 112
>PCF11_HUMAN (O94913) Pre-mRNA cleavage complex 2 protein Pcf11 (Pre-mRNA cleavage| complex II protein Pcf11) (Fragment) Length = 1654 Score = 28.9 bits (63), Expect = 6.0 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Frame = +1 Query: 187 RKKNKPVQPNCEKDYSQTDDQT*QPSPKWHEPVNSPSHEPLRCL---LLAPCSVPTLQE 354 R K P+C +DY T PSP PV +P + L + L PC P ++E Sbjct: 1567 RVDGKIYHPSCYEDYQNTSSFDCTPSPS-KTPVENPLNIMLNIVKNELQEPCDSPKVKE 1624
>TAGH_ENTFA (Q831L8) Teichoic acids export ATP-binding protein tagH (EC| 3.6.3.40) Length = 447 Score = 28.9 bits (63), Expect = 6.0 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 5/89 (5%) Frame = +2 Query: 32 TISVKNTTIMYLCPQ*YMSHCKNQPIHICKQ-LH----VGRLLIPRKMALRASHASAGKK 196 T+ K+ I+ LC Y+S + I + +H + R+ +P K+A + ++A K Sbjct: 306 TLGTKSLLILLLCMIFYVSLTFVKGISLTTAFIHPAETIQRIFVPEKVAGKDTNAVKTTK 365 Query: 197 TSPCSQTVRRTTRKLMIKPDNQVRNGMNQ 283 T P S R ++ P N N ++ Sbjct: 366 TKPASTKESRQQEEVQPSPTNVPENNNSE 394
>CORO_YEAST (Q06440) Coronin-like protein| Length = 651 Score = 28.5 bits (62), Expect = 7.9 Identities = 18/63 (28%), Positives = 26/63 (41%) Frame = +1 Query: 109 PYLQTVTRRTSPHTKENGIEGKPCICRKKNKPVQPNCEKDYSQTDDQT*QPSPKWHEPVN 288 P R P T+E +E K QP EK S+++ + Q +PK P+ Sbjct: 409 PSFHEAKRPQQPTTQETALE---------EKKEQPKVEKPISESEKEVKQEAPKSPSPLK 459 Query: 289 SPS 297 S S Sbjct: 460 SAS 462
>STP2_GORGO (Q9N1A5) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)| Length = 133 Score = 28.5 bits (62), Expect = 7.9 Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 6/123 (4%) Frame = +1 Query: 76 IVHEPLQKSTHPYLQTVTR--RTSPHTKENGIEGKPCICRKKNKPVQPNCEKDYSQTDDQ 249 I H L ++ P +T TR +T + G ++ N +S + Q Sbjct: 10 ITHTQLHSNSQPQSRTCTRHCQTFSQSCRQSHRGSRSRSSSQSPASHRNPTGAHSSSGHQ 69 Query: 250 T*QPS----PKWHEPVNSPSHEPLRCLLLAPCSVPTLQETTEEKHLKKCGQAPVNLLSRQ 417 + P+ PK H+ + H P R +L CS P ++ E K KK + + + Sbjct: 70 SQSPNTSPPPKRHKKTMNSHHSPRRPTIL-HCSCPKNRKNLEGKLKKKKMAKRIQQVYKT 128 Query: 418 KAR 426 K R Sbjct: 129 KTR 131 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,313,713 Number of Sequences: 219361 Number of extensions: 1403555 Number of successful extensions: 3860 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3755 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3857 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
