ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl41a12 |
|---|---|
| Clone Library Name | barley_pub |
>SYV_FUGRU (P49696) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 1217 Score = 33.5 bits (75), Expect = 0.14 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = -1 Query: 307 QKLQHALSQKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEA 173 +K LS+K+ Y+EK P VQE+D KL +L + EA Sbjct: 1165 EKQIEKLSEKISKGDYKEKVPVKVQEQDTEKLRQSQTELEKVKEA 1209
>SYV_CARHZ (Q3AF87) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 878 Score = 32.3 bits (72), Expect = 0.31 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = -1 Query: 289 LSQKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVI 182 L+QK+ G+ KAP V ++ KLTAF+ + V+ Sbjct: 832 LNQKLNNPGFLAKAPAEVVNKEREKLTAFYREKEVL 867
>SYV_RAT (Q04462) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 1264 Score = 32.3 bits (72), Expect = 0.31 Identities = 18/45 (40%), Positives = 23/45 (51%) Frame = -1 Query: 307 QKLQHALSQKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEA 173 Q+ L ++ ASGY K P VQE D KL +LR + EA Sbjct: 1212 QRQAQRLQERRAASGYSAKVPLEVQEADEVKLQQTEAELRKVDEA 1256
>SYV_HUMAN (P26640) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) (Protein G7a) Length = 1264 Score = 32.0 bits (71), Expect = 0.41 Identities = 18/45 (40%), Positives = 23/45 (51%) Frame = -1 Query: 307 QKLQHALSQKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEA 173 Q+ L ++ ASGY K P VQE D KL +LR + EA Sbjct: 1212 QRQAQRLRERRAASGYPVKVPLEVQEADEAKLQQTEAELRKVDEA 1256
>SYV_MOUSE (Q9Z1Q9) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) (Protein G7a) Length = 1263 Score = 30.8 bits (68), Expect = 0.91 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = -1 Query: 307 QKLQHALSQKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEA 173 Q+ L ++ AS Y K P VQE D KL +LR + EA Sbjct: 1211 QRQAQRLQERRAASSYSAKVPLEVQEADEAKLQQTEAELRKVDEA 1255
>SYV_ARATH (P93736) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 1108 Score = 30.8 bits (68), Expect = 0.91 Identities = 14/51 (27%), Positives = 25/51 (49%) Frame = -1 Query: 307 QKLQHALSQKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEAEKKLDA 155 QK + L + M S Y EK P +++E++ KL ++ + +L A Sbjct: 1050 QKQKEKLQKMMSVSTYEEKVPANIKEDNANKLAKILQEFDFFEKESARLAA 1100
>SYV_PELCD (Q3A253) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 899 Score = 29.6 bits (65), Expect = 2.0 Identities = 15/44 (34%), Positives = 26/44 (59%) Frame = -1 Query: 286 SQKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEAEKKLDA 155 S+K+ + KAP +V E+D +KL E+L ++ + +KL A Sbjct: 854 SKKLSNESFLAKAPAAVLEKDRQKLADAEEKLSILKQGLEKLAA 897
>SYV_THETH (P96142) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 862 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -1 Query: 283 QKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEA 173 +K+ + G+REKAP V E + +L EQ I EA Sbjct: 821 RKLASPGFREKAPKEVVEAEEARLKENLEQAERIREA 857
>SYV_THET8 (Q5SJ45) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 862 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -1 Query: 283 QKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEA 173 +K+ + G+REKAP V E + +L EQ I EA Sbjct: 821 RKLASPGFREKAPKEVVEAEEARLKENLEQAERIREA 857
>SYV_THET2 (Q72JG7) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 862 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -1 Query: 283 QKMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEA 173 +K+ + G+REKAP V E + +L EQ I EA Sbjct: 821 RKLASPGFREKAPKEVVEAEEARLRENLEQAERIREA 857
>UBIE_BRUME (Q8YDE4) Ubiquinone/menaquinone biosynthesis methyltransferase ubiE| (EC 2.1.1.-) Length = 269 Score = 28.9 bits (63), Expect = 3.4 Identities = 13/36 (36%), Positives = 23/36 (63%) Frame = +2 Query: 191 QLLEKGGELPHVLLLDTGGSLLSVTGRFHLLRQGML 298 +++E G HV +LD GS+L V GR +++G++ Sbjct: 98 RIVEASGRQAHVTILDINGSMLGV-GRERAIKKGLI 132
>CD2AP_HUMAN (Q9Y5K6) CD2-associated protein (Cas ligand with multiple SH3| domains) (Adapter protein CMS) Length = 639 Score = 28.5 bits (62), Expect = 4.5 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Frame = +2 Query: 62 PQKKGAVSTSKQKCQ*VPI---ETESRLKSTARLRI*FLLSLTDDPQLLEKGGELPHVLL 232 P+K + + K Q V I +TE ++K+ R F T++ +L K GE+ H++ Sbjct: 241 PEKPLILQSLGPKTQSVEITKTDTEGKIKAKEYCRTLFAYEGTNEDELTFKEGEIIHLIS 300 Query: 233 LDTG 244 +TG Sbjct: 301 KETG 304
>UBIE_BRUSU (Q8FUZ3) Ubiquinone/menaquinone biosynthesis methyltransferase ubiE| (EC 2.1.1.-) Length = 269 Score = 28.5 bits (62), Expect = 4.5 Identities = 13/36 (36%), Positives = 23/36 (63%) Frame = +2 Query: 191 QLLEKGGELPHVLLLDTGGSLLSVTGRFHLLRQGML 298 +++E G HV +LD GS+L V GR +++G++ Sbjct: 98 RIVEVSGRQAHVTILDINGSMLGV-GRERAIKKGLI 132
>SYV_NEIMB (Q9K1H7) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 945 Score = 28.1 bits (61), Expect = 5.9 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Frame = -1 Query: 307 QKLQHALSQ---KMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEAEKKL 161 +KLQ AL + K+ GY EKAP + E+D L +++ + KL Sbjct: 892 EKLQKALDKLNAKLSKPGYTEKAPAHLVEKDKADLAELEDKMAKVQNQLAKL 943
>SYV_NEIMA (Q9JX22) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 945 Score = 28.1 bits (61), Expect = 5.9 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Frame = -1 Query: 307 QKLQHALSQ---KMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEAEKKL 161 +KLQ AL + K+ GY EKAP + E+D L +++ + KL Sbjct: 892 EKLQKALDKLNAKLSKPGYTEKAPAHLVEKDKADLAELEDKMAKVQTQLSKL 943
>SYV_NEIG1 (Q5F5W0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 945 Score = 28.1 bits (61), Expect = 5.9 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Frame = -1 Query: 307 QKLQHALSQ---KMEASGYREKAPPSVQEEDMRKLTAFFEQLRVIGEAEKKL 161 +KLQ AL + K+ GY EKAP + E+D L +++ + KL Sbjct: 892 EKLQKALDKLNAKLSKPGYTEKAPAHLVEKDKADLAELEDKMAKVQNQLAKL 943
>DJLA_SHEON (Q8EB99) DnaJ-like protein djlA| Length = 262 Score = 27.7 bits (60), Expect = 7.7 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = -1 Query: 265 GYREKAPPSVQEEDMRKLTAFFEQLRVIGEAEKK 164 G+ KA V E D+R T +Q+R+ G+A K+ Sbjct: 65 GHVAKASGRVTETDIRIATLLMDQMRLTGDARKE 98
>GATD_METAC (Q8TR66) Glutamyl-tRNA(Gln) amidotransferase subunit D (EC 6.3.5.-)| (Glu-ADT subunit D) Length = 424 Score = 27.7 bits (60), Expect = 7.7 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = +2 Query: 179 TDDPQLLEKGGELPHVLLLDTGGSLLS 259 T++ +L E G +LP + +L TGG++ S Sbjct: 71 TNEEELPEPGKKLPKIAILSTGGTIAS 97 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,998,500 Number of Sequences: 219361 Number of extensions: 790553 Number of successful extensions: 2560 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2537 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2560 length of database: 80,573,946 effective HSP length: 77 effective length of database: 63,683,149 effective search space used: 1528395576 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
