ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl41a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CSD_PSEPK (Q9Z408) Probable cysteine desulfurase (EC 2.8.1.7) 32 0.48
2GIDA_PELUB (Q4FNR6) tRNA uridine 5-carboxymethylaminomethyl modi... 30 1.8
3GATB_BIFLO (Q8G769) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfe... 29 2.4
4CSD_STAES (Q8CTA4) Probable cysteine desulfurase (EC 2.8.1.7) 28 4.0
5CSD_STAEQ (Q5HQQ0) Probable cysteine desulfurase (EC 2.8.1.7) 28 4.0
6CUT9_SCHPO (P41889) 20S cyclosome/APC complex protein cut9 (Cell... 28 6.9
7DC1I2_RAT (Q62871) Cytoplasmic dynein 1 intermediate chain 2 (Dy... 27 9.0
8DC1I2_HUMAN (Q13409) Cytoplasmic dynein 1 intermediate chain 2 (... 27 9.0
9RCNA_ECO57 (Q8X3U5) Nickel/cobalt efflux system rcnA 27 9.0
10RCNA_ECOLI (P76425) Nickel/cobalt efflux system rcnA 27 9.0
11RCNA_ECOL6 (Q8FFX9) Nickel/cobalt efflux system rcnA 27 9.0
12OXAA2_STRPN (Q97NP5) Membrane protein oxaA 2 precursor 27 9.0
13DC1I2_MOUSE (O88487) Cytoplasmic dynein 1 intermediate chain 2 (... 27 9.0

>CSD_PSEPK (Q9Z408) Probable cysteine desulfurase (EC 2.8.1.7)|
          Length = 401

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +3

Query: 171 QLSTGNEILMSSIELHYILVPTLTLAHRHRQHFRVPRLSMPG 296
           +L  G+EI +S++E H  L+P   LAHR   H  V  L   G
Sbjct: 106 RLEAGDEIAISALEHHANLLPWQQLAHRRNLHLVVLPLDAHG 147



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>GIDA_PELUB (Q4FNR6) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 623

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 47  TANKVLCGKIVETRAKSLNGLLLLQDNKNI*NRYRK 154
           +  K+LCGK++ T    LNGL+ + D +    R+ +
Sbjct: 142 SGKKILCGKLILTTGTFLNGLIHIGDERTPAGRFNE 177



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>GATB_BIFLO (Q8G769) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B|
           (EC 6.3.5.-) (Asp/Glu-ADT subunit B)
          Length = 499

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +3

Query: 138 EIGTEKTH--PAVQLSTGNEILMSSIELHYILVPTLTLAHRHRQHFRVPRLSMPGLPKE 308
           EI  E  H   A Q + G  +   + +  Y   P L + H  ++H    +  MP +P+E
Sbjct: 266 EILQETRHWDEATQTTAGGRLKSDADDYRYFPDPDLVMLHITKEHIEEMKAQMPEMPRE 324



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>CSD_STAES (Q8CTA4) Probable cysteine desulfurase (EC 2.8.1.7)|
          Length = 413

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 22/74 (29%), Positives = 37/74 (50%)
 Frame = +3

Query: 174 LSTGNEILMSSIELHYILVPTLTLAHRHRQHFRVPRLSMPGLPKEGPLKISQQGRINQAT 353
           +S G+EI+++ +E H  +VP   LA R     +   L    + K+G L++       +AT
Sbjct: 113 ISEGDEIVVTEMEHHANIVPWQQLAKR-----KNATLKFIPMTKDGELQLDD----IKAT 163

Query: 354 VGCNAFIVLLFHVS 395
           +     IV + HVS
Sbjct: 164 INDKTKIVAIAHVS 177



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>CSD_STAEQ (Q5HQQ0) Probable cysteine desulfurase (EC 2.8.1.7)|
          Length = 413

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 22/74 (29%), Positives = 37/74 (50%)
 Frame = +3

Query: 174 LSTGNEILMSSIELHYILVPTLTLAHRHRQHFRVPRLSMPGLPKEGPLKISQQGRINQAT 353
           +S G+EI+++ +E H  +VP   LA R     +   L    + K+G L++       +AT
Sbjct: 113 ISEGDEIVVTEMEHHANIVPWQQLAKR-----KNATLKFIPMTKDGELQLDD----IKAT 163

Query: 354 VGCNAFIVLLFHVS 395
           +     IV + HVS
Sbjct: 164 INDKTKIVAIAHVS 177



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>CUT9_SCHPO (P41889) 20S cyclosome/APC complex protein cut9 (Cell untimely torn|
           protein 9)
          Length = 671

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 117 YRIIKIYEIGTEKTHPAVQLSTGNEILMSSIELHYI--LVPTLTLAHRH 257
           YR +K+Y+   +  +  + LST +  + ++I L Y+   +P L + H H
Sbjct: 526 YRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLH 574



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>DC1I2_RAT (Q62871) Cytoplasmic dynein 1 intermediate chain 2 (Dynein|
           intermediate chain 2, cytosolic) (DH IC-2) (Cytoplasmic
           dynein intermediate chain 2)
          Length = 638

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/63 (23%), Positives = 29/63 (46%)
 Frame = +3

Query: 105 VYCFYRIIKIYEIGTEKTHPAVQLSTGNEILMSSIELHYILVPTLTLAHRHRQHFRVPRL 284
           VYC      +  +GT+  H  + +ST  +I   S+++      ++ L H+  +   V  +
Sbjct: 384 VYC------VNVVGTQNAHNLISISTDGKICSWSLDMLSHPQDSMELVHKQSKAVAVTSM 437

Query: 285 SMP 293
           S P
Sbjct: 438 SFP 440



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>DC1I2_HUMAN (Q13409) Cytoplasmic dynein 1 intermediate chain 2 (Dynein|
           intermediate chain 2, cytosolic) (DH IC-2) (Cytoplasmic
           dynein intermediate chain 2)
          Length = 638

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/63 (23%), Positives = 29/63 (46%)
 Frame = +3

Query: 105 VYCFYRIIKIYEIGTEKTHPAVQLSTGNEILMSSIELHYILVPTLTLAHRHRQHFRVPRL 284
           VYC      +  +GT+  H  + +ST  +I   S+++      ++ L H+  +   V  +
Sbjct: 384 VYC------VNVVGTQNAHNLISISTDGKICSWSLDMLSHPQDSMELVHKQSKAVAVTSM 437

Query: 285 SMP 293
           S P
Sbjct: 438 SFP 440



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>RCNA_ECO57 (Q8X3U5) Nickel/cobalt efflux system rcnA|
          Length = 283

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 360 SQPWLDLFCLVVIFSVGLL*EGQAWRGE 277
           ++PWL L   V+I S       + WRGE
Sbjct: 86  AEPWLQLISAVIIISTAFWMFWRTWRGE 113



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>RCNA_ECOLI (P76425) Nickel/cobalt efflux system rcnA|
          Length = 274

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 360 SQPWLDLFCLVVIFSVGLL*EGQAWRGE 277
           ++PWL L   V+I S       + WRGE
Sbjct: 86  AEPWLQLISAVIIISTAFWMFWRTWRGE 113



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>RCNA_ECOL6 (Q8FFX9) Nickel/cobalt efflux system rcnA|
          Length = 274

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 360 SQPWLDLFCLVVIFSVGLL*EGQAWRGE 277
           ++PWL L   V+I S       + WRGE
Sbjct: 86  AEPWLQLISAVIIISTAFWMFWRTWRGE 113



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>OXAA2_STRPN (Q97NP5) Membrane protein oxaA 2 precursor|
          Length = 308

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 18/84 (21%), Positives = 39/84 (46%)
 Frame = +3

Query: 36  YIQKLQTKYSAEK*LRREQNR*MVYCFYRIIKIYEIGTEKTHPAVQLSTGNEILMSSIEL 215
           Y+Q L + +  E  ++REQ + M+Y    +I ++ + +  +     +  G  +++    +
Sbjct: 189 YLQSLLSLHGVEDEMQREQIKKMIYMSPLMIVVFSLFSPASVTLYWVVGGFMMILQQFIV 248

Query: 216 HYILVPTLTLAHRHRQHFRVPRLS 287
           +YI+ P L    R       P+ S
Sbjct: 249 NYIVRPKLRKKVREELAKNPPKAS 272



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>DC1I2_MOUSE (O88487) Cytoplasmic dynein 1 intermediate chain 2 (Dynein|
           intermediate chain 2, cytosolic) (DH IC-2) (Cytoplasmic
           dynein intermediate chain 2)
          Length = 612

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/63 (23%), Positives = 29/63 (46%)
 Frame = +3

Query: 105 VYCFYRIIKIYEIGTEKTHPAVQLSTGNEILMSSIELHYILVPTLTLAHRHRQHFRVPRL 284
           VYC      +  +GT+  H  + +ST  +I   S+++      ++ L H+  +   V  +
Sbjct: 358 VYC------VNVVGTQNAHNLISISTDGKICSWSLDMLSHPQDSMELVHKQSKAVAVTSM 411

Query: 285 SMP 293
           S P
Sbjct: 412 SFP 414


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,460,655
Number of Sequences: 219361
Number of extensions: 1075041
Number of successful extensions: 2589
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2589
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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