ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl41a08 |
|---|---|
| Clone Library Name | barley_pub |
>CSD_PSEPK (Q9Z408) Probable cysteine desulfurase (EC 2.8.1.7)| Length = 401 Score = 31.6 bits (70), Expect = 0.48 Identities = 17/42 (40%), Positives = 23/42 (54%) Frame = +3 Query: 171 QLSTGNEILMSSIELHYILVPTLTLAHRHRQHFRVPRLSMPG 296 +L G+EI +S++E H L+P LAHR H V L G Sbjct: 106 RLEAGDEIAISALEHHANLLPWQQLAHRRNLHLVVLPLDAHG 147
>GIDA_PELUB (Q4FNR6) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 623 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = +2 Query: 47 TANKVLCGKIVETRAKSLNGLLLLQDNKNI*NRYRK 154 + K+LCGK++ T LNGL+ + D + R+ + Sbjct: 142 SGKKILCGKLILTTGTFLNGLIHIGDERTPAGRFNE 177
>GATB_BIFLO (Q8G769) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B| (EC 6.3.5.-) (Asp/Glu-ADT subunit B) Length = 499 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Frame = +3 Query: 138 EIGTEKTH--PAVQLSTGNEILMSSIELHYILVPTLTLAHRHRQHFRVPRLSMPGLPKE 308 EI E H A Q + G + + + Y P L + H ++H + MP +P+E Sbjct: 266 EILQETRHWDEATQTTAGGRLKSDADDYRYFPDPDLVMLHITKEHIEEMKAQMPEMPRE 324
>CSD_STAES (Q8CTA4) Probable cysteine desulfurase (EC 2.8.1.7)| Length = 413 Score = 28.5 bits (62), Expect = 4.0 Identities = 22/74 (29%), Positives = 37/74 (50%) Frame = +3 Query: 174 LSTGNEILMSSIELHYILVPTLTLAHRHRQHFRVPRLSMPGLPKEGPLKISQQGRINQAT 353 +S G+EI+++ +E H +VP LA R + L + K+G L++ +AT Sbjct: 113 ISEGDEIVVTEMEHHANIVPWQQLAKR-----KNATLKFIPMTKDGELQLDD----IKAT 163 Query: 354 VGCNAFIVLLFHVS 395 + IV + HVS Sbjct: 164 INDKTKIVAIAHVS 177
>CSD_STAEQ (Q5HQQ0) Probable cysteine desulfurase (EC 2.8.1.7)| Length = 413 Score = 28.5 bits (62), Expect = 4.0 Identities = 22/74 (29%), Positives = 37/74 (50%) Frame = +3 Query: 174 LSTGNEILMSSIELHYILVPTLTLAHRHRQHFRVPRLSMPGLPKEGPLKISQQGRINQAT 353 +S G+EI+++ +E H +VP LA R + L + K+G L++ +AT Sbjct: 113 ISEGDEIVVTEMEHHANIVPWQQLAKR-----KNATLKFIPMTKDGELQLDD----IKAT 163 Query: 354 VGCNAFIVLLFHVS 395 + IV + HVS Sbjct: 164 INDKTKIVAIAHVS 177
>CUT9_SCHPO (P41889) 20S cyclosome/APC complex protein cut9 (Cell untimely torn| protein 9) Length = 671 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%) Frame = +3 Query: 117 YRIIKIYEIGTEKTHPAVQLSTGNEILMSSIELHYI--LVPTLTLAHRH 257 YR +K+Y+ + + + LST + + ++I L Y+ +P L + H H Sbjct: 526 YRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLH 574
>DC1I2_RAT (Q62871) Cytoplasmic dynein 1 intermediate chain 2 (Dynein| intermediate chain 2, cytosolic) (DH IC-2) (Cytoplasmic dynein intermediate chain 2) Length = 638 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/63 (23%), Positives = 29/63 (46%) Frame = +3 Query: 105 VYCFYRIIKIYEIGTEKTHPAVQLSTGNEILMSSIELHYILVPTLTLAHRHRQHFRVPRL 284 VYC + +GT+ H + +ST +I S+++ ++ L H+ + V + Sbjct: 384 VYC------VNVVGTQNAHNLISISTDGKICSWSLDMLSHPQDSMELVHKQSKAVAVTSM 437 Query: 285 SMP 293 S P Sbjct: 438 SFP 440
>DC1I2_HUMAN (Q13409) Cytoplasmic dynein 1 intermediate chain 2 (Dynein| intermediate chain 2, cytosolic) (DH IC-2) (Cytoplasmic dynein intermediate chain 2) Length = 638 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/63 (23%), Positives = 29/63 (46%) Frame = +3 Query: 105 VYCFYRIIKIYEIGTEKTHPAVQLSTGNEILMSSIELHYILVPTLTLAHRHRQHFRVPRL 284 VYC + +GT+ H + +ST +I S+++ ++ L H+ + V + Sbjct: 384 VYC------VNVVGTQNAHNLISISTDGKICSWSLDMLSHPQDSMELVHKQSKAVAVTSM 437 Query: 285 SMP 293 S P Sbjct: 438 SFP 440
>RCNA_ECO57 (Q8X3U5) Nickel/cobalt efflux system rcnA| Length = 283 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -1 Query: 360 SQPWLDLFCLVVIFSVGLL*EGQAWRGE 277 ++PWL L V+I S + WRGE Sbjct: 86 AEPWLQLISAVIIISTAFWMFWRTWRGE 113
>RCNA_ECOLI (P76425) Nickel/cobalt efflux system rcnA| Length = 274 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -1 Query: 360 SQPWLDLFCLVVIFSVGLL*EGQAWRGE 277 ++PWL L V+I S + WRGE Sbjct: 86 AEPWLQLISAVIIISTAFWMFWRTWRGE 113
>RCNA_ECOL6 (Q8FFX9) Nickel/cobalt efflux system rcnA| Length = 274 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -1 Query: 360 SQPWLDLFCLVVIFSVGLL*EGQAWRGE 277 ++PWL L V+I S + WRGE Sbjct: 86 AEPWLQLISAVIIISTAFWMFWRTWRGE 113
>OXAA2_STRPN (Q97NP5) Membrane protein oxaA 2 precursor| Length = 308 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/84 (21%), Positives = 39/84 (46%) Frame = +3 Query: 36 YIQKLQTKYSAEK*LRREQNR*MVYCFYRIIKIYEIGTEKTHPAVQLSTGNEILMSSIEL 215 Y+Q L + + E ++REQ + M+Y +I ++ + + + + G +++ + Sbjct: 189 YLQSLLSLHGVEDEMQREQIKKMIYMSPLMIVVFSLFSPASVTLYWVVGGFMMILQQFIV 248 Query: 216 HYILVPTLTLAHRHRQHFRVPRLS 287 +YI+ P L R P+ S Sbjct: 249 NYIVRPKLRKKVREELAKNPPKAS 272
>DC1I2_MOUSE (O88487) Cytoplasmic dynein 1 intermediate chain 2 (Dynein| intermediate chain 2, cytosolic) (DH IC-2) (Cytoplasmic dynein intermediate chain 2) Length = 612 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/63 (23%), Positives = 29/63 (46%) Frame = +3 Query: 105 VYCFYRIIKIYEIGTEKTHPAVQLSTGNEILMSSIELHYILVPTLTLAHRHRQHFRVPRL 284 VYC + +GT+ H + +ST +I S+++ ++ L H+ + V + Sbjct: 358 VYC------VNVVGTQNAHNLISISTDGKICSWSLDMLSHPQDSMELVHKQSKAVAVTSM 411 Query: 285 SMP 293 S P Sbjct: 412 SFP 414 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,460,655 Number of Sequences: 219361 Number of extensions: 1075041 Number of successful extensions: 2589 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2545 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2589 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
