ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl41a07 |
|---|---|
| Clone Library Name | barley_pub |
>PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit 2 (26S| proteasome regulatory subunit RPN1) (26S proteasome regulatory subunit S2) (26S proteasome subunit p97) Length = 908 Score = 53.5 bits (127), Expect = 3e-07 Identities = 24/34 (70%), Positives = 30/34 (88%) Frame = -3 Query: 435 LLAAGERAELATDKYIPLTSTLEGFVILKKNPEY 334 LLA GERAELAT++++P+T LEGFVIL+KNP Y Sbjct: 873 LLAHGERAELATEEFLPVTPILEGFVILRKNPNY 906
>PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit 2 (26S| proteasome regulatory subunit RPN1) (26S proteasome regulatory subunit S2) (26S proteasome subunit p97) (Tumor necrosis factor type 1 receptor-associated protein 2) (55.11 protein) Length = 908 Score = 53.5 bits (127), Expect = 3e-07 Identities = 24/34 (70%), Positives = 30/34 (88%) Frame = -3 Query: 435 LLAAGERAELATDKYIPLTSTLEGFVILKKNPEY 334 LLA GERAELAT++++P+T LEGFVIL+KNP Y Sbjct: 873 LLAHGERAELATEEFLPVTPILEGFVILRKNPNY 906
>RPN1_YEAST (P38764) 26S proteasome regulatory subunit RPN1 (Proteasome| non-ATPase subunit 1) Length = 992 Score = 53.1 bits (126), Expect = 3e-07 Identities = 26/37 (70%), Positives = 29/37 (78%) Frame = -3 Query: 435 LLAAGERAELATDKYIPLTSTLEGFVILKKNPEYHEE 325 LL GERAEL TD+YI TS +EG VILKKNP+Y EE Sbjct: 955 LLNHGERAELETDEYISYTSHIEGVVILKKNPDYREE 991
>RPN1_NEUCR (Q7S8R8) 26S proteasome regulatory subunit rpn-1| Length = 883 Score = 50.1 bits (118), Expect = 3e-06 Identities = 24/37 (64%), Positives = 29/37 (78%) Frame = -3 Query: 435 LLAAGERAELATDKYIPLTSTLEGFVILKKNPEYHEE 325 LL GERAEL D+YI L+STLEG VIL+KNP++ E Sbjct: 846 LLGYGERAELEDDQYISLSSTLEGLVILRKNPDWEGE 882
>RPN1_CANGA (Q6FPV6) 26S proteasome regulatory subunit RPN1| Length = 983 Score = 49.3 bits (116), Expect = 5e-06 Identities = 23/37 (62%), Positives = 27/37 (72%) Frame = -3 Query: 435 LLAAGERAELATDKYIPLTSTLEGFVILKKNPEYHEE 325 LL GERAEL D+YI T+ +EG VILKKNP + EE Sbjct: 946 LLGHGERAELENDEYISYTNNIEGVVILKKNPNFQEE 982
>RPN1_SCHPO (P87048) 26S proteasome regulatory subunit rpn1 (Proteasome| non-ATPase subunit mts4) (19S regulatory cap region of 26S protease subunit 2) Length = 891 Score = 42.4 bits (98), Expect(2) = 2e-04 Identities = 24/33 (72%), Positives = 25/33 (75%) Frame = -3 Query: 435 LLAAGERAELATDKYIPLTSTLEGFVILKKNPE 337 LL ERAELAT+ Y PLTS LEG VILKKN E Sbjct: 854 LLHHNERAELATEAYTPLTS-LEGIVILKKNTE 885 Score = 20.8 bits (42), Expect(2) = 2e-04 Identities = 8/11 (72%), Positives = 9/11 (81%) Frame = -1 Query: 461 GFQTHTTPVCL 429 G+ THTTPV L Sbjct: 845 GWVTHTTPVLL 855
>GLMS_TREPA (O83833) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 634 Score = 30.8 bits (68), Expect = 1.8 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = -1 Query: 158 CN*LQSCLVARMDRHATCTHSGGHVGVELVVSFDLKLICICI 33 CN +S LV D TH+G +GV SF +L+C+ + Sbjct: 387 CNGARSTLVRESDA-VLLTHAGSEIGVASTKSFTTQLVCLLV 427
>BAR3_CHITE (Q03376) Balbiani ring protein 3 precursor| Length = 1700 Score = 29.6 bits (65), Expect = 3.9 Identities = 11/34 (32%), Positives = 16/34 (47%) Frame = +3 Query: 345 SSSELQSPPTWRSGECTCQSPILLAPPLQADRSG 446 + + SP TW C+CQ P + PP +G Sbjct: 1391 AQKKCDSPKTWDENSCSCQCPKNMRPPTGGCNAG 1424
>KR195_HUMAN (Q3LI72) Keratin-associated protein 19-5| Length = 72 Score = 29.3 bits (64), Expect = 5.1 Identities = 13/43 (30%), Positives = 21/43 (48%) Frame = +2 Query: 242 DDNLYLRACHAGELQKLASDQSLGGFPHSSWYSGFFFRITKPS 370 DD Y C G ++L GG+ + S + G+ +R +PS Sbjct: 19 DDLGYGYGCGCGSFRRLGYGGGYGGYGYGSGFGGYGYRSCRPS 61
>DNAK_ANAVT (O05714) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 688 Score = 28.9 bits (63), Expect = 6.7 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +3 Query: 219 EHSEGSSVTTTFTSEHAMLGNSKNLHQIKA*GVSLTPRGIP 341 E+++ S E M G++K+L + K G+ PRGIP Sbjct: 425 ENNQNSVEIHVVQGEREMAGDNKSLGRFKLYGIPPAPRGIP 465
>DNAK1_ANASP (Q9ZEJ6) Chaperone protein dnaK1 (Heat shock protein 70-1) (Heat| shock 70 kDa protein 1) (HSP70-1) Length = 688 Score = 28.9 bits (63), Expect = 6.7 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +3 Query: 219 EHSEGSSVTTTFTSEHAMLGNSKNLHQIKA*GVSLTPRGIP 341 E+++ S E M G++K+L + K G+ PRGIP Sbjct: 425 ENNQNSVEIHVVQGEREMAGDNKSLGRFKLYGIPPAPRGIP 465
>MURE_LISMO (Q8Y5L9) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 491 Score = 28.9 bits (63), Expect = 6.7 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 6/95 (6%) Frame = +3 Query: 15 NFQYTLDTYTNKLKVKRHHQFNSYMSTRVGTSGMPVHSGNQTRLQLVTA---LVDGIKMF 185 ++ +T++ Y N + NSY ++ + + R+Q TA + GIK Sbjct: 205 DYHHTMEEYANAKSLLFAQLGNSYHTSNPKIAVLNADDAESVRMQKATAAHIITFGIKQE 264 Query: 186 LDEPPANAEV*EHSEGSSVTT---TFTSEHAMLGN 281 D +N ++ H + T FT + M+GN Sbjct: 265 ADFQASNIKITSHGSTFDLGTPVGNFTLKIKMIGN 299
>PHSA_SALTY (P37600) Thiosulfate reductase precursor (EC 1.-.-.-)| Length = 758 Score = 28.5 bits (62), Expect = 8.7 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +1 Query: 1 SSKDVTFSTHLIHIQISLRSKDTTSSTPTCP 93 SSK + S+HL H+ + S +T + TCP Sbjct: 145 SSKSGSLSSHLFHLATAFGSPNTFTHASTCP 175
>CATA_ASPFU (P78574) Catalase A (EC 1.11.1.6) (Fast catalase)| Length = 750 Score = 28.5 bits (62), Expect = 8.7 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -1 Query: 314 PLGFDLMQVFGVPQHGMLGGKGCRHGGSFTMLLHLGI 204 P + +MQ FGV ++ +G RH F + HLG+ Sbjct: 228 PRSYRMMQGFGVNTFALVNKEGKRHFVKFHWIPHLGV 264
>CATA_EMENI (P55305) Catalase A (EC 1.11.1.6) (Spore-specific catalase)| Length = 744 Score = 28.5 bits (62), Expect = 8.7 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -1 Query: 314 PLGFDLMQVFGVPQHGMLGGKGCRHGGSFTMLLHLGI 204 P + +MQ FGV ++ +G RH F + HLG+ Sbjct: 228 PRSYRMMQGFGVNTFSLVNKEGKRHFVKFHWIPHLGV 264 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,987,660 Number of Sequences: 219361 Number of extensions: 1702673 Number of successful extensions: 4836 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4685 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4835 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
