Clone Name | rbastl41a07 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_464147.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3121 Score = 97.6 bits (49), Expect = 3e-17 Identities = 100/117 (85%) Strand = Plus / Minus Query: 318 tccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaacgtgg 377 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct: 2770 tccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaataccg 2711 Query: 378 aggtcaggggaatgtacttgtcagtcgccaattctgctcgctcccccgctgcaagca 434 | ||||| |||||||| || || || || ||||| || || ||||| |||||||||| Sbjct: 2710 aagtcagcggaatgtatttttcggttgctaattcagcccgttcccctgctgcaagca 2654
>ref|XM_506717.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1008_C03.11 mRNA Length = 3169 Score = 97.6 bits (49), Expect = 3e-17 Identities = 100/117 (85%) Strand = Plus / Minus Query: 318 tccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaacgtgg 377 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct: 2777 tccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaataccg 2718 Query: 378 aggtcaggggaatgtacttgtcagtcgccaattctgctcgctcccccgctgcaagca 434 | ||||| |||||||| || || || || ||||| || || ||||| |||||||||| Sbjct: 2717 aagtcagcggaatgtatttttcggttgctaattcagcccgttcccctgctgcaagca 2661
>dbj|AK121963.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108C09, full insert sequence Length = 3120 Score = 97.6 bits (49), Expect = 3e-17 Identities = 100/117 (85%) Strand = Plus / Minus Query: 318 tccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaacgtgg 377 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct: 2769 tccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaataccg 2710 Query: 378 aggtcaggggaatgtacttgtcagtcgccaattctgctcgctcccccgctgcaagca 434 | ||||| |||||||| || || || || ||||| || || ||||| |||||||||| Sbjct: 2709 aagtcagcggaatgtatttttcggttgctaattcagcccgttcccctgctgcaagca 2653
>dbj|AK105609.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-B03, full insert sequence Length = 3169 Score = 97.6 bits (49), Expect = 3e-17 Identities = 100/117 (85%) Strand = Plus / Minus Query: 318 tccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaacgtgg 377 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct: 2777 tccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaataccg 2718 Query: 378 aggtcaggggaatgtacttgtcagtcgccaattctgctcgctcccccgctgcaagca 434 | ||||| |||||||| || || || || ||||| || || ||||| |||||||||| Sbjct: 2717 aagtcagcggaatgtatttttcggttgctaattcagcccgttcccctgctgcaagca 2661
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 93.7 bits (47), Expect = 5e-16 Identities = 53/55 (96%) Strand = Plus / Minus Query: 318 tccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaa 372 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 2570749 tccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaa 2570695
>dbj|AP005288.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1008_C03 Length = 103297 Score = 93.7 bits (47), Expect = 5e-16 Identities = 53/55 (96%) Strand = Plus / Minus Query: 318 tccctcactcctcgtggtattccgggttcttcttcagaattacaaagccctccaa 372 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 49532 tccctcactcctcgttatattccgggttcttcttcagaattacaaagccctccaa 49478
>gb|AY104160.1| Zea mays PCO080306 mRNA sequence Length = 1460 Score = 71.9 bits (36), Expect = 2e-09 Identities = 45/48 (93%) Strand = Plus / Minus Query: 322 tcactcctcgtggtattccgggttcttcttcagaattacaaagccctc 369 ||||||||||||||| || ||||||||||||||||| ||||||||||| Sbjct: 1044 tcactcctcgtggtactctgggttcttcttcagaatcacaaagccctc 997
>gb|BT018338.1| Zea mays clone EL01T0403A05.c mRNA sequence Length = 1023 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 322 tcactcctcgtggtattccgggttcttcttcagaattacaaagccctc 369 |||||| || ||||| |||||||||||||||| ||| ||||||||||| Sbjct: 595 tcactcttcatggtactccgggttcttcttcaaaatcacaaagccctc 548
>gb|AC102655.7| Mus musculus chromosome 19, clone RP23-13N2, complete sequence Length = 202294 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 173 aataaaaatgtttttggatgaa 194 |||||||||||||||||||||| Sbjct: 56757 aataaaaatgtttttggatgaa 56736
>gb|AC163094.5| Mus musculus chromosome 5, clone RP23-123P10, complete sequence Length = 208850 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 tacacacttgatacatataca 44 ||||||||||||||||||||| Sbjct: 48749 tacacacttgatacatataca 48729
>emb|CR352209.10| Zebrafish DNA sequence from clone DKEY-150O13 in linkage group 24, complete sequence Length = 143425 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 26 cacacttgatacatatacaaa 46 ||||||||||||||||||||| Sbjct: 114349 cacacttgatacatatacaaa 114369 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 26 cacacttgatacatatacaaa 46 ||||||||||||||||||||| Sbjct: 104510 cacacttgatacatatacaaa 104530
>emb|BX663612.9| Zebrafish DNA sequence from clone DKEY-24M14 in linkage group 7, complete sequence Length = 181415 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 cacacttgatacatatacaaa 46 ||||||||||||||||||||| Sbjct: 154850 cacacttgatacatatacaaa 154830
>dbj|AK053276.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130006D24 product:unclassifiable, full insert sequence Length = 3651 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 24 tacacacttgatacatataca 44 ||||||||||||||||||||| Sbjct: 2970 tacacacttgatacatataca 2990
>ref|NM_105369.1| Arabidopsis thaliana glycerophosphodiester phosphodiesterase/ kinase AT1G66980 mRNA, complete cds Length = 3512 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 taaaaatgtttttggatgaa 194 |||||||||||||||||||| Sbjct: 3459 taaaaatgtttttggatgaa 3440
>ref|NM_020816.1| Homo sapiens kinesin family member 17 (KIF17), mRNA Length = 3968 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 agccctccaacgtggaggtc 382 |||||||||||||||||||| Sbjct: 1983 agccctccaacgtggaggtc 2002
>ref|XM_513170.1| PREDICTED: Pan troglodytes kinesin family member 17 (LOC456592), mRNA Length = 2922 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 agccctccaacgtggaggtc 382 |||||||||||||||||||| Sbjct: 560 agccctccaacgtggaggtc 579
>gb|AC164628.8| Mus musculus 6 BAC RP23-82H18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205032 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 acacacttgatacatataca 44 |||||||||||||||||||| Sbjct: 184660 acacacttgatacatataca 184679
>gb|AC121317.7| Mus musculus chromosome 6, clone RP24-343J20, complete sequence Length = 179807 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 acacacttgatacatataca 44 |||||||||||||||||||| Sbjct: 23843 acacacttgatacatataca 23862
>gb|AY812494.1| Schistosoma japonicum SJCHGC08055 protein mRNA, partial cds Length = 626 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 ggagtggtatgcgtctgaaa 458 |||||||||||||||||||| Sbjct: 376 ggagtggtatgcgtctgaaa 357
>gb|AY484427.1| Homo sapiens kinesin isoform KIF17B (KIF17B) mRNA, complete cds Length = 3968 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 agccctccaacgtggaggtc 382 |||||||||||||||||||| Sbjct: 1983 agccctccaacgtggaggtc 2002
>gb|AC007152.9| Arabidopsis thaliana chromosome I BAC F1O19 genomic sequence, complete sequence Length = 90387 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 taaaaatgtttttggatgaa 194 |||||||||||||||||||| Sbjct: 27065 taaaaatgtttttggatgaa 27084
>ref|XM_731938.1| Plasmodium chabaudi chabaudi hypothetical protein (PC101680.00.0) partial mRNA Length = 287 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 acatatacaaataagcttaa 55 |||||||||||||||||||| Sbjct: 213 acatatacaaataagcttaa 232
>ref|XM_732666.1| Plasmodium chabaudi chabaudi hypothetical protein (PC105151.00.0) partial mRNA Length = 984 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 cacttgatacatatacaaat 47 |||||||||||||||||||| Sbjct: 599 cacttgatacatatacaaat 618
>emb|AL663074.13| Human DNA sequence from clone RP5-930J4 on chromosome 1 Contains the 5' end of the KIF17 gene for kinesin family member 17, three novel genes, the 3' end of gene HP1-BP74 and two CpG islands, complete sequence Length = 85781 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 agccctccaacgtggaggtc 382 |||||||||||||||||||| Sbjct: 16384 agccctccaacgtggaggtc 16365
>gb|BC065927.1| Homo sapiens kinesin family member 17, mRNA (cDNA clone MGC:70843 IMAGE:6171598), complete cds Length = 3750 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 agccctccaacgtggaggtc 382 |||||||||||||||||||| Sbjct: 1747 agccctccaacgtggaggtc 1766
>emb|BX294171.10| Zebrafish DNA sequence from clone DKEY-263M10 in linkage group 1, complete sequence Length = 121187 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 ctccaaaaacttgcatcaga 300 |||||||||||||||||||| Sbjct: 30564 ctccaaaaacttgcatcaga 30545
>gb|AC090943.3| Homo sapiens chromosome 3 clone RP11-22O15 map 3p, complete sequence Length = 162949 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 atgccgaggtgtaagagcat 224 |||||||||||||||||||| Sbjct: 107859 atgccgaggtgtaagagcat 107878
>gb|AC008273.2| Homo sapiens BAC clone RP11-150O2 from 2, complete sequence Length = 151297 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 tccctcactcctcgtggtat 337 |||||||||||||||||||| Sbjct: 66748 tccctcactcctcgtggtat 66729
>gb|AC091291.2| Homo sapiens chromosome 3 clone RP11-654A18 map 3p, complete sequence Length = 184579 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 atgccgaggtgtaagagcat 224 |||||||||||||||||||| Sbjct: 65374 atgccgaggtgtaagagcat 65393
>emb|AL953916.14| Zebrafish DNA sequence from clone CH211-246I7 in linkage group 12, complete sequence Length = 177468 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 taaaaatgtttttggatgaa 194 |||||||||||||||||||| Sbjct: 161862 taaaaatgtttttggatgaa 161843
>emb|AL672058.5| Zebrafish DNA sequence from clone BUSM1-47J20 in linkage group 1, complete sequence Length = 130339 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 ctccaaaaacttgcatcaga 300 |||||||||||||||||||| Sbjct: 100541 ctccaaaaacttgcatcaga 100560
>emb|BX005407.5| Zebrafish DNA sequence from clone CH211-222C22 in linkage group 5, complete sequence Length = 209796 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 tacacacttgatacatatac 43 |||||||||||||||||||| Sbjct: 49955 tacacacttgatacatatac 49936
>gb|AY449460.1| Oikopleura dioica clone BACOIKO004 7xk22, complete sequence Length = 131867 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 tttttggatgaaccaccagc 202 |||||||||||||||||||| Sbjct: 64488 tttttggatgaaccaccagc 64507
>dbj|AB037826.2| Homo sapiens mRNA for KIAA1405 protein, partial cds Length = 3570 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 agccctccaacgtggaggtc 382 |||||||||||||||||||| Sbjct: 1585 agccctccaacgtggaggtc 1604
>emb|AL844859.5| Mouse DNA sequence from clone RP23-263O20 on chromosome 2, complete sequence Length = 151493 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 aataaaaatgtttttggatg 192 |||||||||||||||||||| Sbjct: 61609 aataaaaatgtttttggatg 61590
>emb|AL604043.11| Mouse DNA sequence from clone RP23-391H8 on chromosome 11, complete sequence Length = 221374 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 acacacttgatacatataca 44 |||||||||||||||||||| Sbjct: 64556 acacacttgatacatataca 64575
>emb|AL138784.30| Human DNA sequence from clone RP5-1102M4 on chromosome 1, complete sequence Length = 150434 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 agccctccaacgtggaggtc 382 |||||||||||||||||||| Sbjct: 39457 agccctccaacgtggaggtc 39438 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,182,346 Number of Sequences: 3902068 Number of extensions: 4182346 Number of successful extensions: 77168 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77069 Number of HSP's gapped (non-prelim): 99 length of query: 461 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 439 effective length of database: 17,147,199,772 effective search space: 7527620699908 effective search space used: 7527620699908 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)