>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-2)
          Length = 1558

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 334  NG*GHPRPSARPPPTTLRSAVP 399
            +G GH RPS  PPPTT+ +  P
Sbjct: 1215 SGPGHMRPSFEPPPTTIAAVPP 1236

>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-like protein) (Atrophin-1-related protein)
          Length = 1566

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 334  NG*GHPRPSARPPPTTLRSAVP 399
            +G GH RPS  PPPTT+ +  P
Sbjct: 1223 SGPGHMRPSFEPPPTTIAAVPP 1244

>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-related protein)
          Length = 1559

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 334  NG*GHPRPSARPPPTTLRSAVP 399
            +G GH RPS  PPPTT+ +  P
Sbjct: 1216 SGPGHMRPSFEPPPTTIAAVPP 1237

>REF2P_DROME (P14199) Protein ref(2)P (Refractory to sigma P)|
          Length = 599

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 63  QCDTLDICKKCHIFYTHPTY 4
           QC   D+C+KC + + HP +
Sbjct: 144 QCSNYDLCQKCELAHKHPEH 163

>RNG3_SCHPO (O74994) Ring assembly protein 3|
          Length = 746

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -1

Query: 345 TSTVTSNRRLHPLASRLVTTNAQKK*CLLL-RYPLLVHITQLRS 217
           T    SNR +HP++  L T +A  +  +LL ++ +L+ +T L S
Sbjct: 523 TKAFPSNRAIHPMSKLLSTNSADTEYPILLGKFEVLLALTNLAS 566

>RL31_WIGBR (Q8D2S5) 50S ribosomal protein L31|
          Length = 71

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 51 LDICKKCHIFYT 16
          LD+C KCH FYT
Sbjct: 34 LDVCNKCHPFYT 45

>RL31_BUCAP (Q8K907) 50S ribosomal protein L31|
          Length = 72

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = -1

Query: 51 LDICKKCHIFYT 16
          LDIC KCH FYT
Sbjct: 34 LDICAKCHPFYT 45

>RL31_BUCAI (P57639) 50S ribosomal protein L31|
          Length = 72

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = -1

Query: 51 LDICKKCHIFYT 16
          LDIC KCH FYT
Sbjct: 34 LDICAKCHPFYT 45

>REF2P_DROSI (Q24629) Protein ref(2)P (Refractory to sigma P)|
          Length = 599

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 63  QCDTLDICKKCHIFYTHPTY 4
           QC   D+C+KC   + HP +
Sbjct: 144 QCSNFDLCQKCESAHKHPEH 163


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,169,347
Number of Sequences: 219361
Number of extensions: 853983
Number of successful extensions: 2308
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2308
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)