ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MRL1_YEAST (Q06815) Mannose 6-phosphate receptor-like protein 1 ... 32 0.56
2UBP8_YEAST (P50102) Ubiquitin carboxyl-terminal hydrolase 8 (EC ... 29 2.8

>MRL1_YEAST (Q06815) Mannose 6-phosphate receptor-like protein 1 precursor|
          Length = 381

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 19  GTSVRMLLLNRISENTKEIKLCCNFGIGLYYCSYYTQVQTVQTCPRSTK 165
           G   +  LLN + +   + K   ++   L+ CSY+ +V+++  CP S K
Sbjct: 185 GKDKKATLLNFVCDKEIQSKAQISYIGNLHNCSYFFEVRSIHACPTSNK 233



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>UBP8_YEAST (P50102) Ubiquitin carboxyl-terminal hydrolase 8 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 8) (Ubiquitin-specific
           processing protease 8) (Deubiquitinating enzyme 8)
          Length = 471

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 201 HSFRCFTCKVVNFGATRTCLYCLYLG 124
           ++ +C TC  +N GAT  CL C + G
Sbjct: 42  NTMKCGTCHEINSGATFMCLQCGFCG 67


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,930,437
Number of Sequences: 219361
Number of extensions: 695067
Number of successful extensions: 1768
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1766
length of database: 80,573,946
effective HSP length: 62
effective length of database: 66,973,564
effective search space used: 1607365536
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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