>PSME2_MOUSE (P97372) Proteasome activator complex subunit 2 (Proteasome|
           activator 28-beta subunit) (PA28beta) (PA28b) (Activator
           of multicatalytic protease subunit 2) (11S regulator
           complex beta subunit) (REG-beta)
          Length = 238

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 35  TDIKQTTETSQAGYLTLHNKIFHQHA---SKTWQVMISCQHIISWIQHL 172
           TD ++  E  + GYL  + K+    A    + W +   C  +I+WIQHL
Sbjct: 79  TDKQEKKEVPKCGYLPGNEKLLALLALVKPEVWTLKEKCILVITWIQHL 127

>SNAA1_ARATH (Q9LXZ5) Alpha-soluble NSF attachment protein 1 (Alpha-SNAP1)|
           (N-ethylmaleimide-sensitive factor attachment protein,
           alpha 1)
          Length = 381

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 24/75 (32%), Positives = 39/75 (52%)
 Frame = +1

Query: 37  RYKTDHRNQSSRIFNITQQDISSTCFQNLASHDKLSAHYFLDPASNTIDRLISPERRTVT 216
           RY+T   + SSR FN++QQ  S  CF+    H+   AH       + I  L   ++RT+T
Sbjct: 22  RYQTTRVSNSSRDFNLSQQHCS--CFRPKRRHE---AHL------SFIGTLQYSKQRTIT 70

Query: 217 NNNTASYSDRHGVIL 261
              +A+ + R  ++L
Sbjct: 71  RAASATIARRQLLLL 85

>PSME2_HUMAN (Q9UL46) Proteasome activator complex subunit 2 (Proteasome|
           activator 28-beta subunit) (PA28beta) (PA28b) (Activator
           of multicatalytic protease subunit 2) (11S regulator
           complex beta subunit) (REG-beta)
          Length = 238

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 35  TDIKQTTETSQAGYLTLHNKIFHQHA---SKTWQVMISCQHIISWIQHL 172
           TD ++  E  + G+L  + K+    A    + W +   C  +I+WIQHL
Sbjct: 79  TDKQEKKEVPKCGFLPGNEKVLSLLALVKPEVWTLKEKCILVITWIQHL 127

>PSME2_BOVIN (Q5E9G3) Proteasome activator complex subunit 2 (Proteasome|
           activator 28-beta subunit) (PA28beta) (PA28b)
          Length = 238

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 35  TDIKQTTETSQAGYLTLHNKIFHQHA---SKTWQVMISCQHIISWIQHL 172
           TD ++  E  + G+L  + K+    A    + W +   C  +I+WIQHL
Sbjct: 79  TDKQEKKEVPKCGFLPGNEKVLALLALVKPEVWTLKEKCILVITWIQHL 127

>YGB5_YEAST (P33199) Hypothetical 15.0 kDa protein in PDR6-PDR1 intergenic|
           region
          Length = 130

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 94  DISSTCFQNLASHDKLSAHYFLDPASNTI 180
           D+ S CF N    D LS + FL P S+ +
Sbjct: 72  DVDSLCFSNCFQPDALSGNVFLPPRSSNM 100


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,191,730
Number of Sequences: 219361
Number of extensions: 1274571
Number of successful extensions: 3313
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3313
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)