ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FSHR_FELCA (Q5GJ04) Follicle-stimulating hormone receptor precur... 28 4.8
2PAFA_CAEEL (Q22943) Platelet-activating factor acetylhydrolase h... 28 8.2

>FSHR_FELCA (Q5GJ04) Follicle-stimulating hormone receptor precursor (FSH-R)|
           (Follitropin receptor)
          Length = 695

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -2

Query: 229 LSLSHVMSLF*YMNYNLAPCGILLICCCDSHL-LPVSKPHLVAGCLESKI 83
           LS  +VMSL       L     ++ICCC +H+ L V  P++V+   ++KI
Sbjct: 526 LSQLYVMSLL-----VLNVLAFVVICCCYAHIYLTVRNPNIVSSSSDTKI 570



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>PAFA_CAEEL (Q22943) Platelet-activating factor acetylhydrolase homolog 2 (EC|
           3.1.1.47)
          Length = 388

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +1

Query: 82  QFLTPNTQQPNVVSTLAVGDYRSSR*AKSHMAQDCSSYTRIKTLHGKG 225
           ++L  ++Q+ NV+++  VG+ R      + M+  C  +  +   HG G
Sbjct: 71  EYLGQSSQKMNVITSTVVGEKREDCIENAQMSTKCDKWPIVVFSHGLG 118


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,773,709
Number of Sequences: 219361
Number of extensions: 709471
Number of successful extensions: 1222
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 80,573,946
effective HSP length: 56
effective length of database: 68,289,730
effective search space used: 1638953520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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