>EXPA6_ARATH (Q38865) Alpha-expansin 6 precursor (AtEXPA6) (At-EXP6) (AtEx6)|
           (Ath-ExpAlpha-1.8)
          Length = 257

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 112 CTENTHHPTDNGGWCSAMQPN 174
           C  N   P+DNGGWC+  +P+
Sbjct: 110 CPPNFAQPSDNGGWCNPPRPH 130

>METE_SCHPO (Q9UT19) Probable|
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase (EC 2.1.1.14) (Methionine synthase,
           vitamin-B12 independent isozyme) (Cobalamin-independent
           methionine synthase)
          Length = 764

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = -3

Query: 186 WMPNIGLHCTAPPTVVGRV-----MSVFCAQKMQ-VLSVMRGGKLKYPLQVINWN 40
           W+ + G  C  PP +VG V     M+V  +Q  Q + S    G L  P+ ++ W+
Sbjct: 519 WVQSYGSRCVRPPIIVGDVYRPAPMTVKESQYAQSITSKPMKGMLTAPITILRWS 573

>SLIT1_HUMAN (O75093) Slit homolog 1 protein precursor (Slit-1) (Multiple|
            epidermal growth factor-like domains 4)
          Length = 1534

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = -2

Query: 157  CTTHRCR*GDECFLCTENAGTLC---YEGRKTEIPP 59
            C  HRC+ G +C     +   LC   Y G+  EIPP
Sbjct: 1087 CRDHRCQNGAQCMDEVNSYSCLCAEGYSGQLCEIPP 1122

>SLIT1_MOUSE (Q80TR4) Slit homolog 1 protein precursor (Slit-1)|
          Length = 1531

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -2

Query: 157  CTTHRCR*GDECFLCTENAGTLC---YEGRKTEIPPA 56
            C  H+C+ G +C     +   LC   Y G+  EIPPA
Sbjct: 1087 CKDHKCQNGAQCVDEVNSYACLCVEGYSGQLCEIPPA 1123

>EXPA4_ARATH (O48818) Alpha-expansin 4 precursor (AtEXPA4) (At-EXP4) (AtEx4)|
           (Ath-ExpAlpha-1.6)
          Length = 257

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 112 CTENTHHPTDNGGWCSAMQPNVWHPKQQHY 201
           C  N   P+DNGGWC        +P ++H+
Sbjct: 110 CPPNLAQPSDNGGWC--------NPPREHF 131

>EXP16_ARATH (Q9M2S9) Alpha-expansin 16 precursor (AtEXPA16) (At-EXP16) (AtEx16)|
           (Ath-ExpAlpha-1.7)
          Length = 260

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 112 CTENTHHPTDNGGWCS 159
           C  N   P+DNGGWC+
Sbjct: 113 CPPNLAQPSDNGGWCN 128

>Y2562_VIBVU (Q8D9N5) Hypothetical protein VV1_2562|
          Length = 288

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +1

Query: 43  PIYDLQGVFQFSSPHNREYLHFLCTENTHHPTDNGGWCSA-MQPNVWHPKQQHYF 204
           P+ D +  ++F       YLH L  E   +  D   +  A +QPN WH K   +F
Sbjct: 98  PLEDTENSYKFGQ--QLAYLH-LWGEQKEYGCDQDNYLGATLQPNAWHKKWSTFF 149

>EXP17_ARATH (Q9ZSI1) Putative alpha-expansin 17 precursor (AtEXPA17) (At-EXP17)|
           (AtEx17) (Ath-ExpAlpha-1.13)
          Length = 255

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 112 CTENTHHPTDNGGWCSAMQPNVWHPKQQHYFVTITR 219
           C  N    +DNGGWC+  +P+      Q  F+TI +
Sbjct: 108 CPPNFAQASDNGGWCNPPRPH--FDMAQPAFLTIAK 141

>SLIT1_RAT (O88279) Slit homolog 1 protein precursor (Slit-1) (Multiple|
            epidermal growth factor-like domains 4)
          Length = 1531

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -2

Query: 157  CTTHRCR*GDECFLCTENAGTLC---YEGRKTEIPPA 56
            C  H+C+ G +C     +   LC   Y G+  EIPPA
Sbjct: 1087 CKDHQCQNGAQCVDEINSYACLCAEGYSGQLCEIPPA 1123

>LEU3_HANAN (Q9HDQ1) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM|
           dehydrogenase) (IMDH) (3-IPM-DH)
          Length = 364

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +2

Query: 74  FPPLITESTCIFCAQKTLITLPTTVGGAVQCSPMFG 181
           FP L  +   I  A   LI  PTT+ G V  S MFG
Sbjct: 213 FPQLTVQHQLIDSAAMILIKSPTTLNGIVITSNMFG 248

>CDC24_YEAST (P11433) Cell division control protein 24 (Calcium regulatory|
           protein)
          Length = 854

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +3

Query: 81  PS*QRVPAFSVHRKHSSPYRQRWVVQCNAAQCLASKTTTLFRYDNA 218
           PS QR+ A  +H KH     + W +  NAA    S T    R D +
Sbjct: 347 PSKQRIGALFMHSKHFFKLYEPWSIGQNAAIEFLSSTLHKMRVDES 392

>YMM5_YEAST (Q12746) Hypothetical 35.3 kDa protein in HMGS-TUB3 intergenic|
           region
          Length = 312

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 96  VPAFSVHRKHSSPYRQRWVVQCNAAQCLASKTTTLFRY 209
           V A+S +++  S Y  RW       Q + SK T L+R+
Sbjct: 55  VRAYSAYKRRRSLYPDRWTSLELEDQTIISKNTALYRF 92

>TMC1_MOUSE (Q8R4P5) Transmembrane cochlear-expressed protein 1 (Beethoven|
           protein) (Deafness protein)
          Length = 757

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 69  SVFLPS*QRVPAFSVHRKHSSPYRQRWVVQ-CNAAQCLASKTTTLFRYDNAYL 224
           S F PS   +P  ++ R H+S Y Q W V  CN  +    K +   R +N YL
Sbjct: 588 SFFAPS---LPGINILRLHTSMYFQCWAVMCCNVPEARVFKAS---RSNNFYL 634

>TMC1_HUMAN (Q8TDI8) Transmembrane cochlear-expressed protein 1|
          Length = 760

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 69  SVFLPS*QRVPAFSVHRKHSSPYRQRWVVQ-CNAAQCLASKTTTLFRYDNAYL 224
           S F PS   +P  ++ R H+S Y Q W V  CN  +    K +   R +N YL
Sbjct: 591 SFFAPS---LPGINILRLHTSMYFQCWAVMCCNVPEARVFKAS---RSNNFYL 637

>TSF_ARATH (Q9S7R5) Protein TWIN SISTER of FT (TFL1-like protein)|
          Length = 175

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 76  SSPHNREYLHFLCTE 120
           S+PH REYLH+L T+
Sbjct: 78  SNPHQREYLHWLVTD 92

>TRI56_MOUSE (Q80VI1) Tripartite motif protein 56|
          Length = 734

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
 Frame = -2

Query: 355 PSSCLCLLGDLPTYLFCSMCRLGTAISQGADP-RRIS*SGLPGLSRYALS*RNNVVVLDA 179
           P   LC L    + L C  CRLG  I     P      S  PGL        +N+V L+A
Sbjct: 173 PGEALCFLCQPCSQLLCKDCRLGPHIDHPCLPLAEAVRSRKPGLEELLAGVDSNLVELEA 232

>F19A1_MOUSE (Q7TPG8) Protein FAM19A1 precursor (Chemokine-like protein TAFA-1)|
          Length = 133

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
 Frame = -2

Query: 244 SGLPGLSRYALS*RNNVVVLDA-----KHWAALHCTTHRCR*GDECFLCTENAGTLCYEG 80
           S LPG  + A + RN    +DA     K W    C    C  G+EC    +N+G +C  G
Sbjct: 68  SCLPG--KVAGTTRNRPSCVDASIVIGKWW----CEMEPCLEGEECKTLPDNSGWMCATG 121

Query: 79  RK 74
            K
Sbjct: 122 NK 123

>F19A1_HUMAN (Q7Z5A9) Protein FAM19A1 precursor (Chemokine-like protein TAFA-1)|
          Length = 133

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
 Frame = -2

Query: 244 SGLPGLSRYALS*RNNVVVLDA-----KHWAALHCTTHRCR*GDECFLCTENAGTLCYEG 80
           S LPG  + A + RN    +DA     K W    C    C  G+EC    +N+G +C  G
Sbjct: 68  SCLPG--KVAGTTRNRPSCVDASIVIGKWW----CEMEPCLEGEECKTLPDNSGWMCATG 121

Query: 79  RK 74
            K
Sbjct: 122 NK 123


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,201,785
Number of Sequences: 219361
Number of extensions: 1184054
Number of successful extensions: 2833
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2832
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)