Clone Name | rbastl40h06 |
---|---|
Clone Library Name | barley_pub |
>gb|AC117503.8| Homo sapiens 12 BAC RP11-338K17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 218476 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 aaatgaaaggaacagatctca 64 ||||||||||||||||||||| Sbjct: 131912 aaatgaaaggaacagatctca 131892
>gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete genome Length = 2314078 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 tacaagaacatggcaaacaa 144 |||||||||||||||||||| Sbjct: 407989 tacaagaacatggcaaacaa 407970
>ref|XM_746313.1| Aspergillus fumigatus Af293 hypothetical protein (Afu4g14260) partial mRNA Length = 1500 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 ccctttttgtggatgaacca 220 |||||||||||||||||||| Sbjct: 512 ccctttttgtggatgaacca 493
>emb|CR936846.7| Zebrafish DNA sequence from clone DKEY-20N3 in linkage group 1, complete sequence Length = 80060 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 caaacaacaattctaatgtc 157 |||||||||||||||||||| Sbjct: 35637 caaacaacaattctaatgtc 35656
>gb|AC083890.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-284P20, complete sequence Length = 203967 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ccaggtaaaaatgaaaggaa 55 |||||||||||||||||||| Sbjct: 140284 ccaggtaaaaatgaaaggaa 140303
>emb|AL159159.21| Human DNA sequence from clone RP11-88J11 on chromosome 13 Contains the 3' end of the CDK8 gene for cyclin-dependent kinase 8, complete sequence Length = 144626 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 ggaacagatctcaactcaca 71 |||||||||||||||||||| Sbjct: 17746 ggaacagatctcaactcaca 17727
>gb|AC073365.14| Homo sapiens 3 BAC RP11-479M14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 179598 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 aacatggcaaacaacaattc 150 |||||||||||||||||||| Sbjct: 55044 aacatggcaaacaacaattc 55025
>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I, complete sequence Length = 691920 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 aaaatgaaaggaacagatct 62 |||||||||||||||||||| Sbjct: 382781 aaaatgaaaggaacagatct 382762
>gb|AC009303.3| Homo sapiens BAC clone RP11-98C1 from 2, complete sequence Length = 198652 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 261 caaggctctacaggaacagggcaa 284 |||||||||||||||| ||||||| Sbjct: 169450 caaggctctacaggaatagggcaa 169427
>emb|CT574565.2| Pan troglodytes chromosome X clone CH251-78I22 map Xq28, complete sequence Length = 170088 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 ctcccaggtaaaaatgaaag 52 |||||||||||||||||||| Sbjct: 89048 ctcccaggtaaaaatgaaag 89029
>emb|AL928682.11| Mouse DNA sequence from clone RP23-143K9 on chromosome X, complete sequence Length = 135431 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 gtaaaaatgaaaggaacaga 59 |||||||||||||||||||| Sbjct: 82279 gtaaaaatgaaaggaacaga 82298
>emb|AL731828.22| Mouse DNA sequence from clone RP23-50L5 on chromosome X, complete sequence Length = 228327 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 atgaacttgaaacagatgag 326 |||||||||||||||||||| Sbjct: 124983 atgaacttgaaacagatgag 124964
>emb|AL732405.8| Mouse DNA sequence from clone RP23-149P4 on chromosome X, complete sequence Length = 193425 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 gaaaggaacagatctcaact 67 |||||||||||||||||||| Sbjct: 51224 gaaaggaacagatctcaact 51205
>gb|AC092891.5| Homo sapiens 12 BAC RP11-495C19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 109440 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 taaccctttttgtggatgaa 217 |||||||||||||||||||| Sbjct: 2952 taaccctttttgtggatgaa 2933 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,518,360 Number of Sequences: 3902068 Number of extensions: 3518360 Number of successful extensions: 64904 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64872 Number of HSP's gapped (non-prelim): 32 length of query: 426 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 404 effective length of database: 17,147,199,772 effective search space: 6927468707888 effective search space used: 6927468707888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)