>ARGD_STRCL (Q9LCS5) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)|
          Length = 400

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +2

Query: 41  GIVTKAPGIRPAVQLKLQPDGFVVKVPG---IRPIPVLVTRE 157
           GIV   P + P VQL  Q  GF+V VP    +R IP LV  E
Sbjct: 332 GIVLNEP-LAPQVQLAAQKAGFLVNVPAPDVVRLIPPLVIEE 372

>VP4_ROTSS (P17464) Outer capsid protein VP4 (Hemagglutinin) (Outer layer|
           protein VP4) [Contains: Outer capsid protein VP8; Outer
           capsid protein VP5]
          Length = 776

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +1

Query: 163 RFKFGDLLLHTSVLGYRYTAI---PASHAFSYFSEG 261
           RFKF + ++ +  LGY+++ I   PA++ ++Y  +G
Sbjct: 274 RFKFANTIIKSGGLGYKWSEISFKPANYQYTYTRDG 309

>VP4_ROTS1 (P12976) Outer capsid protein VP4 (Hemagglutinin) (Outer layer|
           protein VP4) [Contains: Outer capsid protein VP8; Outer
           capsid protein VP5]
          Length = 776

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +1

Query: 163 RFKFGDLLLHTSVLGYRYTAI---PASHAFSYFSEG 261
           RFKF + ++ +  LGY+++ I   PA++ ++Y  +G
Sbjct: 274 RFKFANTIIKSGGLGYKWSEISFKPANYQYTYTRDG 309

>VP4_ROTHY (Q06895) Outer capsid protein VP4 (Hemagglutinin) (Outer layer|
           protein VP4) [Contains: Outer capsid protein VP8; Outer
           capsid protein VP5]
          Length = 776

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +1

Query: 163 RFKFGDLLLHTSVLGYRYTAI---PASHAFSYFSEG 261
           RFKF + ++ +  LGY+++ I   PA++ ++Y  +G
Sbjct: 274 RFKFANSIVKSGGLGYKWSEISFKPANYQYTYMRDG 309

>VP4_ROTH6 (P26451) Outer capsid protein VP4 (Hemagglutinin) (Outer layer|
           protein VP4) [Contains: Outer capsid protein VP8; Outer
           capsid protein VP5]
          Length = 776

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +1

Query: 163 RFKFGDLLLHTSVLGYRYTAI---PASHAFSYFSEG 261
           RFKF + ++ +  LGY+++ I   PA++ ++Y  +G
Sbjct: 274 RFKFANAIIKSGGLGYKWSEISFKPANYQYTYTRDG 309

>VP4_ROTF6 (Q07416) Outer capsid protein VP4 (Hemagglutinin) (Outer layer|
           protein VP4) [Contains: Outer capsid protein VP8; Outer
           capsid protein VP5]
          Length = 776

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +1

Query: 163 RFKFGDLLLHTSVLGYRYTAI---PASHAFSYFSEG 261
           RFKF + ++ +  LGY+++ I   PA++ ++Y  +G
Sbjct: 274 RFKFANSIVKSGGLGYKWSEISFKPANYQYTYMRDG 309

>VP4_ROTEH (Q02945) Outer capsid protein VP4 (Hemagglutinin) (Outer layer|
           protein VP4) [Contains: Outer capsid protein VP8; Outer
           capsid protein VP5]
          Length = 776

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +1

Query: 163 RFKFGDLLLHTSVLGYRYTAI---PASHAFSYFSEG 261
           RF+F + ++ +  LGY+++ I   PA++ +SY  +G
Sbjct: 274 RFRFANAIIKSGGLGYKWSEISFKPANYQYSYTRDG 309

>VP4_ROTD9 (Q06894) Outer capsid protein VP4 (Hemagglutinin) (Outer layer|
           protein VP4) [Contains: Outer capsid protein VP8; Outer
           capsid protein VP5]
          Length = 776

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +1

Query: 163 RFKFGDLLLHTSVLGYRYTAI---PASHAFSYFSEG 261
           RFKF + ++ +  LGY+++ I   PA++ ++Y  +G
Sbjct: 274 RFKFANSIVKSGGLGYKWSEISFKPANYQYTYMRDG 309

>VP4_ROTB9 (Q08010) Outer capsid protein VP4 (Hemagglutinin) (Outer layer|
           protein VP4) [Contains: Outer capsid protein VP8; Outer
           capsid protein VP5]
          Length = 770

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +1

Query: 163 RFKFGDLLLHTSVLGYRYTAI---PASHAFSYFSEG 261
           RFKFG+ ++ +  LGY+++ I   P ++ ++Y  +G
Sbjct: 270 RFKFGNTIIKSGGLGYKWSEISYKPMNYEYTYERDG 305

>VP4_ROTHV (P11194) Outer capsid protein VP4 (Hemagglutinin) (Outer layer|
           protein VP4) [Contains: Outer capsid protein VP8; Outer
           capsid protein VP5]
          Length = 775

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +1

Query: 157 IQRFKFGDLLLHTSVLGYRYTAI---PASHAFSYFSEG 261
           I RFKFG+ ++    LGY+++ I    A++ ++Y  +G
Sbjct: 271 IIRFKFGNSIVKVGGLGYKWSEISYKAANYQYNYLRDG 308

>VP4_ROTHP (P11195) Outer capsid protein VP4 (Hemagglutinin) (Outer layer|
           protein VP4) [Contains: Outer capsid protein VP8; Outer
           capsid protein VP5]
          Length = 775

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +1

Query: 157 IQRFKFGDLLLHTSVLGYRYTAI---PASHAFSYFSEG 261
           I RFKFG+ ++    LGY+++ I    A++ ++Y  +G
Sbjct: 271 IIRFKFGNSIIKPGGLGYKWSEISFKAANYQYNYLRDG 308

>VP4_ROTHL (P21284) Outer capsid protein VP4 (Hemagglutinin) (Outer layer|
           protein VP4) [Contains: Outer capsid protein VP8; Outer
           capsid protein VP5]
          Length = 775

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +1

Query: 157 IQRFKFGDLLLHTSVLGYRYTAI---PASHAFSYFSEG 261
           I RFKFG+ ++    LGY+++ I    A++ +SY  +G
Sbjct: 271 IIRFKFGNSVIKLGGLGYKWSEISYKAANYQYSYSRDG 308

>VP4_ROTHD (P11196) Outer capsid protein VP4 (Hemagglutinin) (Outer layer|
           protein VP4) [Contains: Outer capsid protein VP8; Outer
           capsid protein VP5]
          Length = 775

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +1

Query: 157 IQRFKFGDLLLHTSVLGYRYTAI---PASHAFSYFSEG 261
           I RFKFG+ ++    LGY+++ I    A++ +SY  +G
Sbjct: 271 IIRFKFGNSVIKLGGLGYKWSEISYKAANYQYSYSRDG 308

>VP4_ROTH5 (P30214) Outer capsid protein VP4 (Hemagglutinin) (Outer layer|
           protein VP4) [Contains: Outer capsid protein VP8; Outer
           capsid protein VP5]
          Length = 775

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +1

Query: 157 IQRFKFGDLLLHTSVLGYRYTAI---PASHAFSYFSEG 261
           I RFKFG+ ++    LGY+++ I    A++ +SY  +G
Sbjct: 271 IIRFKFGNSVIKLGGLGYKWSEISYKAANYQYSYSRDG 308

>VP4_NCDV (P17465) Outer capsid protein VP4 (Hemagglutinin) (Outer layer|
           protein VP4) [Contains: Outer capsid protein VP8; Outer
           capsid protein VP5]
          Length = 775

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/36 (30%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +1

Query: 163 RFKFGDLLLHTSVLGYRYTAI---PASHAFSYFSEG 261
           RFKF + ++ +  LGY+++ +   PA++ ++Y  +G
Sbjct: 274 RFKFANSIIKSGGLGYKWSEVSFKPANYQYTYTRDG 309

>VP4_ROTSF (P17463) Outer capsid protein VP4 (Hemagglutinin) (Outer layer|
           protein VP4) [Contains: Outer capsid protein VP8; Outer
           capsid protein VP5]
          Length = 776

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/36 (30%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +1

Query: 163 RFKFGDLLLHTSVLGYRYTAI---PASHAFSYFSEG 261
           RFKF + ++ +  LGY+++ +   PA++ ++Y  +G
Sbjct: 274 RFKFANSIIKSGGLGYKWSEVSFKPANYQYTYTRDG 309

>VP4_ROTBC (P08713) Outer capsid protein VP4 (Hemagglutinin) (Outer layer|
           protein VP4) [Contains: Outer capsid protein VP8; Outer
           capsid protein VP5]
          Length = 776

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/36 (30%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +1

Query: 163 RFKFGDLLLHTSVLGYRYTAI---PASHAFSYFSEG 261
           RFKF + ++ +  LGY+++ +   PA++ ++Y  +G
Sbjct: 274 RFKFANSIIKSGGLGYKWSEVSFKPANYQYTYTRDG 309

>VP4_ROTB5 (P36305) Outer capsid protein VP4 (Hemagglutinin) (Outer layer|
           protein VP4) [Contains: Outer capsid protein VP8; Outer
           capsid protein VP5]
          Length = 776

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
 Frame = +1

Query: 157 IQRFKFGDLLLHTSVLGYRYTAI---PASHAFSYFSEG 261
           I RFKF + ++ +  LGY+++ +   PA++ ++Y  +G
Sbjct: 272 IIRFKFANSIVKSGGLGYKWSEVSFKPANYQYTYTRDG 309

>TM9S1_HUMAN (O15321) Transmembrane 9 superfamily protein member 1 precursor|
           (hMP70)
          Length = 606

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 267 P*EWFCSWVAPVNVLLAAGGGSGFEG 344
           P  W C W+  + +LL  G G G EG
Sbjct: 7   PRSWSCQWLPILILLLGTGHGPGVEG 32

>VP4_ROTRH (P12473) Outer capsid protein VP4 (Hemagglutinin) (Outer layer|
           protein VP4) [Contains: Outer capsid protein VP8; Outer
           capsid protein VP5]
          Length = 776

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = +1

Query: 163 RFKFGDLLLHTSVLGYRYTAI---PASHAFSYFSEG 261
           RFKF   ++ +  LGY+++ I   PA++ ++Y  +G
Sbjct: 274 RFKFASSIVKSGGLGYKWSEISFKPANYQYTYTRDG 309

>VP4_ROTHW (P11193) Outer capsid protein VP4 (Hemagglutinin) (Outer layer|
           protein VP4) [Contains: Outer capsid protein VP8; Outer
           capsid protein VP5]
          Length = 775

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +1

Query: 157 IQRFKFGDLLLHTSVLGYRYTAI---PASHAFSYFSEG 261
           I RFKFG+ ++    LGY+++ I    A++ ++Y  +G
Sbjct: 271 IIRFKFGNSIVKMGGLGYKWSEISYKAANYQYNYLRDG 308

>VP4_ROTHK (P13842) Outer capsid protein VP4 (Hemagglutinin) (Outer layer|
           protein VP4) [Contains: Outer capsid protein VP8; Outer
           capsid protein VP5]
          Length = 775

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +1

Query: 157 IQRFKFGDLLLHTSVLGYRYTAI---PASHAFSYFSEG 261
           I RFKFG+ ++    LGY+++ I    A++ ++Y  +G
Sbjct: 271 IIRFKFGNSIVKLGGLGYKWSEISYKAANYQYNYLRDG 308

>NDST2_MOUSE (P52850) Bifunctional heparan sulfate|
           N-deacetylase/N-sulfotransferase 2 (EC 2.8.2.8)
           (Glucosaminyl N-deacetylase/N-sulfotransferase 2)
           (NDST-2) (N-heparan sulfate sulfotransferase 2) (N-HSST
           2) (Mndns) [Includes: Heparan sulfate N-deacetylas
          Length = 883

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 321 PQPARRLRAPPTSRTIPMVIPFAEIA 244
           P P R  R P T+RT P+V+ F E A
Sbjct: 69  PVPPRPQRPPETTRTEPVVLVFVESA 94

>MRAY_RALSO (Q8XVI4) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC|
           2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase)
          Length = 389

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 218 RQFQLRTHSAISAKGITIGMVLLVGGARKRLAGCGWGQRF 337
           R +  +TH   +      G+++L+G A   L  C WG RF
Sbjct: 58  RSYGPQTHLVKAGTPTMGGVLVLIGIAVSTLLWCDWGNRF 97

>C1TC_MOUSE (Q922D8) C-1-tetrahydrofolate synthase, cytoplasmic (C1-THF|
           synthase) [Includes: Methylenetetrahydrofolate
           dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate
           cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate
           synthetase (EC 6.3.4.3)]
          Length = 934

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 50  TKAPGIRPAV-QLKLQPDGFVVKVPGIRPIPV 142
           TKA  +  A+ +LK QPDG  V V GI P P+
Sbjct: 350 TKAKVLLSALDRLKYQPDGKYVVVTGITPTPL 381

>NDST2_BOVIN (O97583) Bifunctional heparan sulfate|
           N-deacetylase/N-sulfotransferase 2 (EC 2.8.2.8)
           (Glucosaminyl N-deacetylase/N-sulfotransferase 2)
           (NDST-2) (CCL44) [Includes: Heparan sulfate
           N-deacetylase 2 (EC 3.-.-.-); Heparan sulfate
           N-sulfotransfera
          Length = 884

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 321 PQPARRLRAPPTSRTIPMVIPFAEIA 244
           P P R  R P T+RT P+V+ F E A
Sbjct: 70  PVPPRPPRPPETARTEPVVLVFVESA 95

>NDST2_HUMAN (P52849) Bifunctional heparan sulfate|
           N-deacetylase/N-sulfotransferase 2 (EC 2.8.2.8)
           (Glucosaminyl N-deacetylase/N-sulfotransferase 2)
           (NDST-2) (N-heparan sulfate sulfotransferase 2) (N-HSST
           2) [Includes: Heparan sulfate N-deacetylase 2 (EC
          Length = 883

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 321 PQPARRLRAPPTSRTIPMVIPFAEIA 244
           P P R  R P T+RT P+V+ F E A
Sbjct: 69  PVPPRPPRPPETARTEPVVLVFVESA 94

>PBPA_XYLFT (Q87AW7) Penicillin-binding protein 1A (PBP-1a) (PBP1a) [Includes:|
           Penicillin-insensitive transglycosylase (EC 2.4.2.-)
           (Peptidoglycan TGase); Penicillin-sensitive
           transpeptidase (EC 3.4.-.-) (DD-transpeptidase)]
          Length = 809

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 8/99 (8%)
 Frame = +2

Query: 44  IVTKAPGIRPAVQLKLQP-------DGFVVKVPG-IRPIPVLVTREFKGLSLGICYYIPV 199
           I +K P IR   Q++LQ        DG ++ + G IR  PV +    + L          
Sbjct: 33  ISSKLPDIRNLKQVELQEPMYVYSHDGLLIAIFGEIRRYPVQIKEVPEQLKQAF------ 86

Query: 200 F*DIGTRQFQLRTHSAISAKGITIGMVLLVGGARKRLAG 316
              + T   +   HS I  KGI   + LL     KR+ G
Sbjct: 87  ---LATEDARFYEHSGIDYKGIARAIWLLATTNEKRVPG 122


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,688,556
Number of Sequences: 219361
Number of extensions: 930199
Number of successful extensions: 2730
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 2608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2729
length of database: 80,573,946
effective HSP length: 90
effective length of database: 60,831,456
effective search space used: 1459954944
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)