ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40h02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK122024.1| Oryza sativa (japonica cultivar-group) cDNA clon... 228 1e-56
2dbj|AK073393.1| Oryza sativa (japonica cultivar-group) cDNA clon... 228 1e-56
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 212 7e-52
4gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome... 212 7e-52
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 212 7e-52
6gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome... 212 7e-52
7gb|AY111084.1| Zea mays CL10933_1 mRNA sequence 64 4e-07
8gb|AC123072.4| Mus musculus BAC clone RP23-87D8 from chromosome ... 42 1.5
9gb|AC125232.4| Homo sapiens BAC clone RP11-1252D15 from 2, compl... 42 1.5
10gb|AC064848.5| Homo sapiens BAC clone RP11-81F3 from 2, complete... 42 1.5
11emb|AL355577.7| Human DNA sequence from clone RP11-299G2 on chro... 40 6.0
12ref|XM_970346.1| PREDICTED: Tribolium castaneum similar to CG169... 40 6.0
13gb|AC104985.3| Homo sapiens chromosome 18, clone RP11-379L18, co... 40 6.0
14gb|AC104988.4| Homo sapiens chromosome 18, clone RP11-732E23, co... 40 6.0
15gb|AC113403.4| Homo sapiens chromosome 5 clone RP11-461O14, comp... 40 6.0
16emb|BX005045.10| Zebrafish DNA sequence from clone CH211-69C9 in... 40 6.0 
>dbj|AK122024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111P14, full
            insert sequence
          Length = 3941

 Score =  228 bits (115), Expect = 1e-56
 Identities = 172/191 (90%)
 Strand = Plus / Minus

                                                                        
Query: 252  gcaaagtatgttggtgaaaacagagactgcctcctgcaggtaggacgccctgtggtcatc 311
            ||||||||||| ||||||||||||||| ||||| ||||||||||| | ||||||||| ||
Sbjct: 3277 gcaaagtatgtcggtgaaaacagagaccgcctcttgcaggtaggatgacctgtggtcgtc 3218

                                                                        
Query: 312  ggggacaggggcatcaagcatcgtctggaagcagcccatgaagagatctggcgtcgagcc 371
            ||| ||||| || | |||||||||||| |||||||||||| |||||||||||||| ||||
Sbjct: 3217 gggcacaggagcgttaagcatcgtctgaaagcagcccatgtagagatctggcgtcaagcc 3158

                                                                        
Query: 372  atcgccggggaagctcattagaagctcacagagctcctctgccatcttcgagaagcatgc 431
             ||||||||| || ||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct: 3157 ctcgccgggggagttcattagtagctcgcacagctcctctgccatcttcgagaagcatgc 3098

                       
Query: 432  ccttgcctcaa 442
            |||||||||||
Sbjct: 3097 ccttgcctcaa 3087
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>dbj|AK073393.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041M14, full
            insert sequence
          Length = 2770

 Score =  228 bits (115), Expect = 1e-56
 Identities = 172/191 (90%)
 Strand = Plus / Minus

                                                                        
Query: 252  gcaaagtatgttggtgaaaacagagactgcctcctgcaggtaggacgccctgtggtcatc 311
            ||||||||||| ||||||||||||||| ||||| ||||||||||| | ||||||||| ||
Sbjct: 1928 gcaaagtatgtcggtgaaaacagagaccgcctcttgcaggtaggatgacctgtggtcgtc 1869

                                                                        
Query: 312  ggggacaggggcatcaagcatcgtctggaagcagcccatgaagagatctggcgtcgagcc 371
            ||| ||||| || | |||||||||||| |||||||||||| |||||||||||||| ||||
Sbjct: 1868 gggcacaggagcgttaagcatcgtctgaaagcagcccatgtagagatctggcgtcaagcc 1809

                                                                        
Query: 372  atcgccggggaagctcattagaagctcacagagctcctctgccatcttcgagaagcatgc 431
             ||||||||| || ||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct: 1808 ctcgccgggggagttcattagtagctcgcacagctcctctgccatcttcgagaagcatgc 1749

                       
Query: 432  ccttgcctcaa 442
            |||||||||||
Sbjct: 1748 ccttgcctcaa 1738
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  212 bits (107), Expect = 7e-52
 Identities = 164/183 (89%)
 Strand = Plus / Minus

                                                                           
Query: 252     gcaaagtatgttggtgaaaacagagactgcctcctgcaggtaggacgccctgtggtcatc 311
               ||||||||||| ||||||||||||||| ||||| ||||||||||| | ||||||||| ||
Sbjct: 3845382 gcaaagtatgtcggtgaaaacagagaccgcctcttgcaggtaggatgacctgtggtcgtc 3845323

                                                                           
Query: 312     ggggacaggggcatcaagcatcgtctggaagcagcccatgaagagatctggcgtcgagcc 371
               ||| ||||| || | |||||||||||| |||||||||||| |||||||||||||| ||||
Sbjct: 3845322 gggcacaggagcgttaagcatcgtctgaaagcagcccatgtagagatctggcgtcaagcc 3845263

                                                                           
Query: 372     atcgccggggaagctcattagaagctcacagagctcctctgccatcttcgagaagcatgc 431
                ||||||||| || ||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct: 3845262 ctcgccgggggagttcattagtagctcgcacagctcctctgccatcttcgagaagcatgc 3845203

                  
Query: 432     cct 434
               |||
Sbjct: 3845202 cct 3845200
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>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0091P11,
              complete sequence
          Length = 132151

 Score =  212 bits (107), Expect = 7e-52
 Identities = 164/183 (89%)
 Strand = Plus / Minus

                                                                          
Query: 252    gcaaagtatgttggtgaaaacagagactgcctcctgcaggtaggacgccctgtggtcatc 311
              ||||||||||| ||||||||||||||| ||||| ||||||||||| | ||||||||| ||
Sbjct: 124006 gcaaagtatgtcggtgaaaacagagaccgcctcttgcaggtaggatgacctgtggtcgtc 123947

                                                                          
Query: 312    ggggacaggggcatcaagcatcgtctggaagcagcccatgaagagatctggcgtcgagcc 371
              ||| ||||| || | |||||||||||| |||||||||||| |||||||||||||| ||||
Sbjct: 123946 gggcacaggagcgttaagcatcgtctgaaagcagcccatgtagagatctggcgtcaagcc 123887

                                                                          
Query: 372    atcgccggggaagctcattagaagctcacagagctcctctgccatcttcgagaagcatgc 431
               ||||||||| || ||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct: 123886 ctcgccgggggagttcattagtagctcgcacagctcctctgccatcttcgagaagcatgc 123827

                 
Query: 432    cct 434
              |||
Sbjct: 123826 cct 123824
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  212 bits (107), Expect = 7e-52
 Identities = 164/183 (89%)
 Strand = Plus / Minus

                                                                           
Query: 252     gcaaagtatgttggtgaaaacagagactgcctcctgcaggtaggacgccctgtggtcatc 311
               ||||||||||| ||||||||||||||| ||||| ||||||||||| | ||||||||| ||
Sbjct: 3845493 gcaaagtatgtcggtgaaaacagagaccgcctcttgcaggtaggatgacctgtggtcgtc 3845434

                                                                           
Query: 312     ggggacaggggcatcaagcatcgtctggaagcagcccatgaagagatctggcgtcgagcc 371
               ||| ||||| || | |||||||||||| |||||||||||| |||||||||||||| ||||
Sbjct: 3845433 gggcacaggagcgttaagcatcgtctgaaagcagcccatgtagagatctggcgtcaagcc 3845374

                                                                           
Query: 372     atcgccggggaagctcattagaagctcacagagctcctctgccatcttcgagaagcatgc 431
                ||||||||| || ||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct: 3845373 ctcgccgggggagttcattagtagctcgcacagctcctctgccatcttcgagaagcatgc 3845314

                  
Query: 432     cct 434
               |||
Sbjct: 3845313 cct 3845311
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>gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0015N19, complete sequence
          Length = 168430

 Score =  212 bits (107), Expect = 7e-52
 Identities = 164/183 (89%)
 Strand = Plus / Minus

                                                                         
Query: 252   gcaaagtatgttggtgaaaacagagactgcctcctgcaggtaggacgccctgtggtcatc 311
             ||||||||||| ||||||||||||||| ||||| ||||||||||| | ||||||||| ||
Sbjct: 51855 gcaaagtatgtcggtgaaaacagagaccgcctcttgcaggtaggatgacctgtggtcgtc 51796

                                                                         
Query: 312   ggggacaggggcatcaagcatcgtctggaagcagcccatgaagagatctggcgtcgagcc 371
             ||| ||||| || | |||||||||||| |||||||||||| |||||||||||||| ||||
Sbjct: 51795 gggcacaggagcgttaagcatcgtctgaaagcagcccatgtagagatctggcgtcaagcc 51736

                                                                         
Query: 372   atcgccggggaagctcattagaagctcacagagctcctctgccatcttcgagaagcatgc 431
              ||||||||| || ||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct: 51735 ctcgccgggggagttcattagtagctcgcacagctcctctgccatcttcgagaagcatgc 51676

                
Query: 432   cct 434
             |||
Sbjct: 51675 cct 51673
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>gb|AY111084.1| Zea mays CL10933_1 mRNA sequence
          Length = 941

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 403 agctcctctgccatcttcgagaagcatgcccttgcctcaa 442
           ||||||||||||||||||||| |||||||||||| |||||
Sbjct: 353 agctcctctgccatcttcgagtagcatgcccttgactcaa 392
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>gb|AC123072.4| Mus musculus BAC clone RP23-87D8 from chromosome 1, complete sequence
          Length = 248675

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 394    agctcacagagctcctctgcc 414
              |||||||||||||||||||||
Sbjct: 157164 agctcacagagctcctctgcc 157144
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>gb|AC125232.4| Homo sapiens BAC clone RP11-1252D15 from 2, complete sequence
          Length = 43275

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 379   gggaagctcattagaagctca 399
             |||||||||||||||||||||
Sbjct: 38327 gggaagctcattagaagctca 38347
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>gb|AC064848.5| Homo sapiens BAC clone RP11-81F3 from 2, complete sequence
          Length = 135809

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 379   gggaagctcattagaagctca 399
             |||||||||||||||||||||
Sbjct: 68579 gggaagctcattagaagctca 68599
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>emb|AL355577.7| Human DNA sequence from clone RP11-299G2 on chromosome 6, complete
            sequence
          Length = 13474

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  aatctctgtaacttgttcca 119
            ||||||||||||||||||||
Sbjct: 4474 aatctctgtaacttgttcca 4455
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>ref|XM_970346.1| PREDICTED: Tribolium castaneum similar to CG16974-PA (LOC664337),
            mRNA
          Length = 2685

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 414  catcttcgagaagcatgccc 433
            ||||||||||||||||||||
Sbjct: 1443 catcttcgagaagcatgccc 1462
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>gb|AC104985.3| Homo sapiens chromosome 18, clone RP11-379L18, complete sequence
          Length = 172187

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 396    ctcacagagctcctctgcca 415
              ||||||||||||||||||||
Sbjct: 144857 ctcacagagctcctctgcca 144876
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>gb|AC104988.4| Homo sapiens chromosome 18, clone RP11-732E23, complete sequence
          Length = 171501

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 396   ctcacagagctcctctgcca 415
             ||||||||||||||||||||
Sbjct: 14621 ctcacagagctcctctgcca 14640
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>gb|AC113403.4| Homo sapiens chromosome 5 clone RP11-461O14, complete sequence
          Length = 167159

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 394    agctcacagagctcctctgc 413
              ||||||||||||||||||||
Sbjct: 116786 agctcacagagctcctctgc 116767
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>emb|BX005045.10| Zebrafish DNA sequence from clone CH211-69C9 in linkage group 19,
              complete sequence
          Length = 161812

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 185    aggaactatgtcatggatca 204
              ||||||||||||||||||||
Sbjct: 131184 aggaactatgtcatggatca 131165


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,093,007
Number of Sequences: 3902068
Number of extensions: 3093007
Number of successful extensions: 53269
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53217
Number of HSP's gapped (non-prelim): 52
length of query: 445
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 423
effective length of database: 17,147,199,772
effective search space: 7253265503556
effective search space used: 7253265503556
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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