ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC122903.4| Mus musculus BAC clone RP23-44N5 from chromosome ... 44 0.17
2gb|AC159278.3| Mus musculus BAC clone RP23-361M12 from chromosom... 44 0.17
3emb|AL928554.24| Mouse DNA sequence from clone RP23-131H7 on chr... 44 0.17
4gb|AC092588.2| Homo sapiens BAC clone RP11-44A12 from 2, complet... 40 2.6
5gb|AC097067.3| Homo sapiens BAC clone RP11-558N14 from 4, comple... 40 2.6
6ref|XM_687723.1| PREDICTED: Danio rerio Datf1_predicted protein ... 40 2.6
7dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticu... 40 2.6
8emb|BX296530.7| Zebrafish DNA sequence from clone DKEY-22H2 in l... 40 2.6
9emb|AL935195.14| Zebrafish DNA sequence from clone CH211-277C7 i... 40 2.6

>gb|AC122903.4| Mus musculus BAC clone RP23-44N5 from chromosome 1, complete sequence
          Length = 169832

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 127  tagtcatcactggtactcatgt 148
            ||||||||||||||||||||||
Sbjct: 8999 tagtcatcactggtactcatgt 8978



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>gb|AC159278.3| Mus musculus BAC clone RP23-361M12 from chromosome 1, complete sequence
          Length = 180181

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 127   tagtcatcactggtactcatgt 148
             ||||||||||||||||||||||
Sbjct: 50072 tagtcatcactggtactcatgt 50093



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>emb|AL928554.24| Mouse DNA sequence from clone RP23-131H7 on chromosome 1, complete
              sequence
          Length = 195568

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 127    tagtcatcactggtactcatgt 148
              ||||||||||||||||||||||
Sbjct: 143718 tagtcatcactggtactcatgt 143697



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>gb|AC092588.2| Homo sapiens BAC clone RP11-44A12 from 2, complete sequence
          Length = 140401

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   acaagaggacgaacattaaa 199
             ||||||||||||||||||||
Sbjct: 20416 acaagaggacgaacattaaa 20435



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>gb|AC097067.3| Homo sapiens BAC clone RP11-558N14 from 4, complete sequence
          Length = 136500

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 4      aagttgaataagagattacattag 27
              ||||||||||||| ||||||||||
Sbjct: 104249 aagttgaataagatattacattag 104226



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>ref|XM_687723.1| PREDICTED: Danio rerio Datf1_predicted protein (Datf1_predicted),
            mRNA
          Length = 8921

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 32   tcatttccacagtacactga 51
            ||||||||||||||||||||
Sbjct: 1594 tcatttccacagtacactga 1575



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>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA,
              complete genome
          Length = 2516575

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 166    ttggactctttacaacaaga 185
              ||||||||||||||||||||
Sbjct: 679102 ttggactctttacaacaaga 679121



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>emb|BX296530.7| Zebrafish DNA sequence from clone DKEY-22H2 in linkage group 11,
             complete sequence
          Length = 153078

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    tcatttccacagtacactga 51
             ||||||||||||||||||||
Sbjct: 10598 tcatttccacagtacactga 10617



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>emb|AL935195.14| Zebrafish DNA sequence from clone CH211-277C7 in linkage group 14,
             complete sequence
          Length = 194053

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 40    acagtacactgaagaaaaactgtt 63
             |||||||||||||||| |||||||
Sbjct: 39594 acagtacactgaagaacaactgtt 39571


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,703,787
Number of Sequences: 3902068
Number of extensions: 1703787
Number of successful extensions: 113363
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113327
Number of HSP's gapped (non-prelim): 36
length of query: 206
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 184
effective length of database: 17,147,199,772
effective search space: 3155084758048
effective search space used: 3155084758048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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