>SYV_NEUCR (P28350) Valyl-tRNA synthetase, mitochondrial precursor (EC|
           6.1.1.9) (Valine--tRNA ligase) (ValRS)
          Length = 1093

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 291 AKYLGRREAAATPSPLCSSATKKKKEIQPASQQVSESVP 175
           AK+  ++ AA    P   SA K+KKE  PA     +S P
Sbjct: 84  AKFAAKQAAAKAKQPAAQSAPKEKKEKTPALPPYEDSTP 122

>OPSD_CATBO (Q17296) Rhodopsin|
          Length = 378

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
 Frame = -2

Query: 313 WVAGPHICKIFGQTG---GCGNPFT 248
           WV GP +C+++G TG   GCG+ +T
Sbjct: 120 WVLGPLVCELYGLTGSLFGCGSIWT 144

>Y1791_AQUAE (O67660) Hypothetical protein aq_1791|
          Length = 127

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 311 GSWASYMQNIWADGRLRQPLHLCAVRPRRRRKKYSQ 204
           GS+ S M+N+  DGR ++   LC   P R R+++ +
Sbjct: 16  GSFQSVMENLVKDGRGKEIQILCMHAPPRERRRFKR 51

>TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protein (EC 6.3.2.-)|
          Length = 4065

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -3

Query: 273  REAAATPSPLCSSATKKKKEIQPASQQVSESVP 175
            REAA  P    S++T++    Q A+QQ SES P
Sbjct: 3359 REAANAPEEQASTSTEQTPAQQEATQQPSESTP 3391

>RNS10_RAT (Q5GAM0) Ribonuclease-like protein 10 precursor (Protein Train A)|
          Length = 212

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 13/59 (22%)
 Frame = -1

Query: 146 NSLFVDLDLNGE---------DKNVCK*AE----TESCRRLYAIAQRMYYYVCTNSKQL 9
           NS  VD DL G          D  +CK A+    T +C  L  I +++    C N+KQL
Sbjct: 151 NSPLVDCDLKGGKCHKSPRPFDLTLCKLAKPGQVTPNCHYLTYITEKVIIITCNNTKQL 209

>CHD6_HUMAN (Q8TD26) Chromodomain-helicase-DNA-binding protein 6 (EC 3.6.1.-)|
           (ATP-dependent helicase CHD6) (CHD-6) (Radiation-induced
           gene B protein)
          Length = 2715

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
 Frame = +3

Query: 144 IAGWLDNETTLELTH*LAGWLAVFLSSSSWP-----NCTEVKGLPQPPVCPNILHI*GPA 308
           +A   D ET  E+TH L  W ++    S+W      +  +VK      V P I H+  PA
Sbjct: 383 VAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDVDPAKVKEFESLQVLPEIKHVERPA 442

Query: 309 T 311
           +
Sbjct: 443 S 443

>T2R55_PONPY (Q645U9) Taste receptor type 2 member 55 (T2R55)|
          Length = 314

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 179 TDSLTCWLAGCISFFFFVAELH 244
           T+ LT WLA C+S F+F    H
Sbjct: 92  TNHLTTWLATCLSIFYFFKIAH 113

>T2R55_PAPHA (Q646G3) Taste receptor type 2 member 55 (T2R55)|
          Length = 314

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 179 TDSLTCWLAGCISFFFFVAELH 244
           T+ LT WLA C+S F+F    H
Sbjct: 92  TNHLTTWLATCLSIFYFFKIAH 113

>T2R55_PANTR (Q646B8) Taste receptor type 2 member 55 (T2R55)|
          Length = 314

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 179 TDSLTCWLAGCISFFFFVAELH 244
           T+ LT WLA C+S F+F    H
Sbjct: 92  TNHLTTWLATCLSIFYFFKIAH 113

>T2R55_PANPA (Q5Y4Z2) Taste receptor type 2 member 55 (T2R55)|
          Length = 314

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 179 TDSLTCWLAGCISFFFFVAELH 244
           T+ LT WLA C+S F+F    H
Sbjct: 92  TNHLTTWLATCLSIFYFFKIAH 113

>T2R55_HUMAN (Q7RTR8) Taste receptor type 2 member 55 (T2R55)|
          Length = 314

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 179 TDSLTCWLAGCISFFFFVAELH 244
           T+ LT WLA C+S F+F    H
Sbjct: 92  TNHLTTWLATCLSIFYFFKIAH 113

>HSLO_BACSU (P37565) 33 kDa chaperonin (Heat shock protein 33 homolog) (HSP33)|
          Length = 291

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 219 KEIQPASQQVSESVPVLFHCPASQQFF 139
           +E+     ++ E++PV FHCP S++ F
Sbjct: 216 EEVLGEKPEILETMPVRFHCPCSKERF 242

>OPSO_LIMPO (P35361) Ocellar opsin|
          Length = 376

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -2

Query: 325 FVPWWVAGPHICKIFGQTG---GCGNPFTSV 242
           F   W+ GP +C+++G  G   GC + ++ V
Sbjct: 109 FAETWILGPFMCEVYGMAGSLFGCASIWSMV 139

>OPSL_LIMPO (P35360) Lateral eye opsin|
          Length = 376

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -2

Query: 325 FVPWWVAGPHICKIFGQTG---GCGNPFTSV 242
           F   W+ GP +C+++G  G   GC + ++ V
Sbjct: 109 FAETWILGPFMCEVYGMAGSLFGCASIWSMV 139

>T2R55_GORGO (Q645Z3) Taste receptor type 2 member 55 (T2R55)|
          Length = 299

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 179 TDSLTCWLAGCISFFFFVAELH 244
           T+ LT WLA C+S F+F    H
Sbjct: 92  TNHLTTWLATCLSVFYFFKIAH 113

>HIR2_YEAST (P32480) Histone transcription regulator 2|
          Length = 875

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 282 LGRREAAATPSPLCSSATKKKKEIQP 205
           L R+   ATPS +   + K+KKE+QP
Sbjct: 452 LKRKPKEATPSNIAPGSKKQKKELQP 477

>OPS6_DROME (O01668) Opsin Rh6 (Rhodopsin Rh6, long-wavelength)|
          Length = 369

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = -2

Query: 328 GFVPWWVAGPHICKIFGQTG---GC 263
           GF   W+ GP +C+++G  G   GC
Sbjct: 108 GFYGTWIMGPFLCELYGMFGSLFGC 132

>VCOM_ADEM1 (O10442) Minor core protein (Protein V) (pV)|
          Length = 228

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -3

Query: 276 RREAAATPSPLCSSATKKKKEIQPASQQVSESVPVLFHCPASQ 148
           RR    +P P  ++A +   E+    ++V+++VPV+ + P+ Q
Sbjct: 159 RRRRRRSPRPRATAAYRSSAEVVERRRRVAQTVPVVRYHPSIQ 201

>MUC2_RAT (Q62635) Mucin-2 precursor (Intestinal mucin 2) (Fragment)|
          Length = 1513

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +3

Query: 216  LSSSSWPNCTEVKGLPQPPVCPNILHI*GPATHHGTKPIT*HL 344
            LS+ S    T +   PQP   P  L    P T   T P T H+
Sbjct: 1388 LSTVSPTTSTPISSTPQPTSSPTTLPTTSPLTSSATSPTTSHI 1430

>ADA24_MOUSE (Q9R160) ADAM 24 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 24) (Testase 1)
          Length = 761

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +3

Query: 192 LAGWLAVFLSSSSWPN--CTEVKGLPQ 266
           L  WL + L SS WP   C E KG P+
Sbjct: 16  LQAWLRMLLFSSVWPPTWCAEYKGPPE 42

>OR4N2_HUMAN (Q8NGD1) Olfactory receptor 4N2 (Olfactory receptor OR14-8)|
          Length = 307

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 206 GCISFFFFVAELHRGEG-VAAASRLPKYFAYMRPSYPPWNKTNNLTLVACLFSIYTG 373
           GCI+  FF+  L  GEG +       +Y A  RP + P    N  T  A + +++ G
Sbjct: 96  GCITQLFFLHFLGGGEGLLLVVMAFDRYIAICRPLHYP-TVMNPRTCYAMMLALWLG 151

>UBR2_MOUSE (Q6WKZ8) Ubiquitin-protein ligase E3 component N-recognin-2 (EC|
            6.-.-.-) (Ubiquitin-protein ligase E3-alpha-2)
            (Ubiquitin-protein ligase E3-alpha-II)
          Length = 1755

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
 Frame = -1

Query: 389  PPSLPPLCR*KTNMQQVLS----YWFCSMVGSWA-SYMQNIWADGRLRQPLHLCAVRPRR 225
            PP+LPP C    ++  +L      +    +  WA  +  + W++  L++ LHL  +  + 
Sbjct: 875  PPALPPFCPLFASLVNILQCDVMLYIMGTILQWAVEHHGSAWSESMLQRVLHLIGMALQE 934

Query: 224  RRKKYSQPASKSVSQF 177
             +          V  F
Sbjct: 935  EKHHLENAVEGHVQTF 950

>Y118_CHLMU (P58106) Hypothetical RNA methyltransferase TC0118 (EC 2.1.1.-)|
          Length = 397

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 298 HICKIFGQTGGCGNPFTSVQFGHEEEE 218
           H CK FG  GGC +P T  +   + +E
Sbjct: 6   HNCKHFGICGGCSSPQTEYELSLKAKE 32

>PSBC_CHLVU (P56308) Photosystem II 44 kDa reaction center protein (P6 protein)|
           (CP43)
          Length = 473

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = +2

Query: 197 WLAG---CISFFFFVAEL-HRGEGVAAASRLPK 283
           WLA    C+ FFFFV  L H G   AAA+   K
Sbjct: 425 WLATSHFCLGFFFFVGHLWHAGRARAAAAGFEK 457

>OPSD_SPHSP (P35362) Rhodopsin (Opsin)|
          Length = 376

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = -2

Query: 313 WVAGPHICKIFGQTG---GCGNPFTSV 242
           WV GP +C+++   G   GCG+ +T V
Sbjct: 118 WVLGPFMCELYALLGSLFGCGSIWTMV 144

>DUSC_VIBPA (Q87N01) tRNA-dihydrouridine synthase C (EC 1.-.-.-)|
          Length = 322

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 236 ELHRGEGVAAASRLPKYFAYMRPSYPPWNK 325
           E+   +G+   +R+ ++FAY+R SYP  N+
Sbjct: 260 EMKGDKGLYYPNRVKQWFAYLRQSYPEANE 289


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,320,634
Number of Sequences: 219361
Number of extensions: 1182638
Number of successful extensions: 3386
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 3308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3383
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)