ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RNF14_HUMAN (Q9UBS8) RING finger protein 14 (Androgen receptor-a... 28 8.7
2JAK3_MOUSE (Q62137) Tyrosine-protein kinase JAK3 (EC 2.7.10.2) (... 28 8.7
3NRX2A_HUMAN (Q9P2S2) Neurexin-2-alpha precursor (Neurexin II-alpha) 28 8.7
4MATK_WELMI (Q8MEW9) Maturase K (Intron maturase) 28 8.7

>RNF14_HUMAN (Q9UBS8) RING finger protein 14 (Androgen receptor-associated|
           protein 54) (Triad2 protein) (HFB30)
          Length = 474

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 23/76 (30%), Positives = 34/76 (44%)
 Frame = +1

Query: 190 KSESTNSGRREYFLDLPRQFSEKKFLLLFQDLCLENLCPQICKVCYPKLKMHKL*AYLPP 369
           K+ES   G    +LDLP+ F  K F+    + CL+N   +   +C           +LPP
Sbjct: 27  KAESVQGGETRIYLDLPQNF--KIFVSGNSNECLQNSGFEY-TIC-----------FLPP 72

Query: 370 LHIHCVWDPDIRSRHP 417
           L ++    PD  S  P
Sbjct: 73  LVLNFELPPDYPSSSP 88



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>JAK3_MOUSE (Q62137) Tyrosine-protein kinase JAK3 (EC 2.7.10.2) (Janus kinase|
           3) (JAK-3)
          Length = 1299

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
 Frame = +1

Query: 274 FQDLCLENLCPQICKVCYPKLKMHKL*A--------YLPPLHIHCVWDPD 399
           F D   E+LC +  K C      H L A        + PP HI C+ D D
Sbjct: 45  FGDYLAEDLCVRAAKACAILPVYHSLFALATEDFSCWFPPSHIFCIEDVD 94



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>NRX2A_HUMAN (Q9P2S2) Neurexin-2-alpha precursor (Neurexin II-alpha)|
          Length = 1712

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = -2

Query: 415 GGDF*CLDPTHNGCEVEVDMLRVCASST*GNKLYIFEDTSSPGINLGIAAGIFFPRIDVA 236
           G +F C D +HN  +   D + +   +   N L +    S+  +NL + +G  +    V 
Sbjct: 294 GNEFFCYDLSHNPIQSSTDEITLAFRTLQRNGLMLHTGKSADYVNLSLKSGAVWL---VI 350

Query: 235 NLGS 224
           NLGS
Sbjct: 351 NLGS 354



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>MATK_WELMI (Q8MEW9) Maturase K (Intron maturase)|
          Length = 524

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 126 FGRKVILQNTQMLVRKKEYADASIQQTSFFLA 31
           FG K +L  T +L++K  Y      QTSFF +
Sbjct: 268 FGEKSVLIGTPILIKKYRYFFCHFWQTSFFFS 299


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,106,288
Number of Sequences: 219361
Number of extensions: 1345986
Number of successful extensions: 2330
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2330
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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