ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PEM3_PHACH (P78733) Peroxidase manganese-dependent H3 precursor ... 30 2.4
2PEM1_PHACH (Q02567) Peroxidase manganese-dependent 1 precursor (... 29 4.1
3TSN8_HUMAN (P19075) Tetraspanin-8 (Tspan-8) (Transmembrane 4 sup... 29 4.1
4ALF_BUCAP (Q8K9B2) Fructose-bisphosphate aldolase class 2 (EC 4.... 29 5.4
5METX_CHLCH (Q3ARA7) Homoserine O-acetyltransferase (EC 2.3.1.31)... 28 9.2

>PEM3_PHACH (P78733) Peroxidase manganese-dependent H3 precursor (EC 1.11.1.13)|
          Length = 380

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
 Frame = -3

Query: 362 DASKLLFPSVERAFSAGTG----ANHLT--VEMHLL*DSELLSTQTLFLAVCICPGLPYI 201
           D S LLFP++E  FSA  G     N+L   ++ H    +  +   T  +A+  CPG P +
Sbjct: 88  DGSMLLFPTIEPNFSANNGIDDSVNNLIPFMQKHNTISAGDIVQFTGAVALTNCPGAPQL 147

Query: 200 CFL 192
            FL
Sbjct: 148 EFL 150



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>PEM1_PHACH (Q02567) Peroxidase manganese-dependent 1 precursor (EC 1.11.1.13)|
           (Peroxidase manganese-dependent I) (MnP-1) (MnP1)
           (Manganese peroxidase isozyme 1)
          Length = 378

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
 Frame = -3

Query: 362 DASKLLFPSVERAFSAGTG----ANHLT--VEMHLL*DSELLSTQTLFLAVCICPGLPYI 201
           D S LLFP+VE  FSA  G     N+L   ++ H    +  L      +A+  CPG P +
Sbjct: 85  DGSMLLFPTVEPNFSANNGIDDSVNNLIPFMQKHNTISAADLVQFAGAVALSNCPGAPRL 144

Query: 200 CFL 192
            FL
Sbjct: 145 EFL 147



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>TSN8_HUMAN (P19075) Tetraspanin-8 (Tspan-8) (Transmembrane 4 superfamily|
           member 3) (Tumor-associated antigen CO-029)
          Length = 237

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 202 FVFSFLFWLCHVGILLLEI 146
           F F+FLFWLC + IL L I
Sbjct: 13  FTFNFLFWLCGILILALAI 31



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>ALF_BUCAP (Q8K9B2) Fructose-bisphosphate aldolase class 2 (EC 4.1.2.13)|
           (Fructose-bisphosphate aldolase class II) (FBP aldolase)
          Length = 359

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 36  TQRTTEINKESSTGNIAICANRIKQSKMIKM 128
           T    +++KE    NIAIC+N +K+ K I M
Sbjct: 140 TSHMIDLSKEHLKENIAICSNYLKKIKKINM 170



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>METX_CHLCH (Q3ARA7) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine|
           O-trans-acetylase) (Homoserine transacetylase) (HTA)
          Length = 357

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 314 QQRRHAPLMEIEAWMHHQGTK 376
           QQ R   L  IE+++HHQG K
Sbjct: 238 QQGRQGALFSIESYLHHQGRK 258


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,266,484
Number of Sequences: 219361
Number of extensions: 1091254
Number of successful extensions: 2616
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2614
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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