>NUP98_RAT (P49793) Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98|
           kDa nucleoporin)
          Length = 937

 Score = 37.4 bits (85), Expect = 0.015
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 379 YKEMLVKKAEEQGVEFISFDAAKGEWKFKVKHFSSYGFAEAE 254
           Y+  L   + +QG +F  +    G W FKV HFS YG  +++
Sbjct: 847 YEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSD 888

>NUP98_HUMAN (P52948) Nuclear pore complex protein Nup98-Nup96 precursor|
           [Contains: Nuclear pore complex protein Nup98
           (Nucleoporin Nup98) (98 kDa nucleoporin); Nuclear pore
           complex protein Nup96 (Nucleoporin Nup96) (96 kDa
           nucleoporin)]
          Length = 1729

 Score = 37.4 bits (85), Expect = 0.015
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 379 YKEMLVKKAEEQGVEFISFDAAKGEWKFKVKHFSSYGFAEAE 254
           Y+  L   + +QG +F  +    G W FKV HFS YG  +++
Sbjct: 848 YEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSD 889

>NU189_SCHPO (Q9UTK4) Nucleoporin nup189 (Nuclear pore protein nup189)|
          Length = 1778

 Score = 35.8 bits (81), Expect = 0.042
 Identities = 20/55 (36%), Positives = 31/55 (56%)
 Frame = -2

Query: 418  TSEPYTEGPRVDKYKEMLVKKAEEQGVEFISFDAAKGEWKFKVKHFSSYGFAEAE 254
            T EP  + P+  +Y + + +    +  EFI F+   G+W FKV+HFS YG  + E
Sbjct: 892  TREPIKD-PQNPRYIQHVKRLHRIKDTEFIDFN--DGKWIFKVQHFSRYGLLDDE 943

>NU145_YEAST (P49687) Nucleoporin NUP145 precursor (EC 3.4.21.-) (Nuclear pore|
           protein NUP145) [Contains: Nucleoporin NUP145N
           (N-NUP145); Nucleoporin NUP145C (C-NUP145)]
          Length = 1317

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -2

Query: 418 TSEPYTEGPRVDKYKEMLVKKAEEQGVEFISFDAAKGEWKFKVKHFSSYGFAEAEVGLID 239
           T +P  +  +  +++    K    + + +IS++   G W FKV HFS +G    E   ID
Sbjct: 560 TKKPMKDTTKFAEFQVFDRKLRSMREMNYISYNPFGGTWTFKVNHFSIWGLVNEEDAEID 619

>CP312_DROME (Q9VVN6) Probable cytochrome P450 312a1 (EC 1.14.-.-) (CYPCCCXIIA1)|
          Length = 510

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 36  RQSIHLYNPHTHTHSTKLAQGCALHKQERSVQNIETKDKPHSIIQKT 176
           R++  + N H H H  KL  G  L+  + + ++I+       ++QKT
Sbjct: 59  RRATEMINEHLHDHRAKLWMGTKLYLVDCNPKDIQALCSAQQLLQKT 105

>NARZ_ECOLI (P19319) Respiratory nitrate reductase 2 alpha chain (EC 1.7.99.4)|
          Length = 1245

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 69   HTHSTKLAQGCALHKQERSVQNIETKDKPHSIIQKTKASQ*ESSEISYN 215
            HTH        ALHK++  ++  + + +P  II     S  ES  +SYN
Sbjct: 981  HTH-------LALHKEDEKIRFRDIQAQPRKIISSPTWSGLESDHVSYN 1022

>STAB2_RAT (Q8CFM6) Stabilin-2 precursor (Hyaluronan receptor for endocytosis)|
            [Contains: 175 kDa stabilin-2 (175 kDa hyaluronan
            receptor for endocytosis)] (Fragment)
          Length = 1431

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 145  KISHIALFRKQKRHNESPPKSVTTSMDGATWNRSGL 252
            +IS     R Q+RH +SPP + + +++   W  + L
Sbjct: 1376 RISQTLCMRPQRRHPQSPPVTPSQTLENRIWRTATL 1411

>MAAY3_SCHCO (P37934) Mating-type protein A-alpha Y3|
          Length = 926

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +3

Query: 120 RSVQNIETKD--KPHSIIQKTKASQ*ESSEISYNFHGRGYMESIRPTSAS 263
           ++ Q++E +D  K H   +KTKA    + ++  +  GR + +S + TS++
Sbjct: 325 KNAQDVEMRDATKSHEKRRKTKAMPRPAGQVPMDVDGRAHKKSTKTTSSA 374


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,021,635
Number of Sequences: 219361
Number of extensions: 887774
Number of successful extensions: 2504
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2502
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)