Clone Name | rbastl40g02 |
---|---|
Clone Library Name | barley_pub |
>gb|AY431550.1| Aedes aegypti ASAP ID: 36969 tetraspanin mRNA sequence Length = 772 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 tgcatgctatctatcgaagc 117 |||||||||||||||||||| Sbjct: 729 tgcatgctatctatcgaagc 748
>gb|DQ440291.1| Aedes aegypti clone AET-3701 tetraspanin mRNA, complete cds Length = 750 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 tgcatgctatctatcgaagc 117 |||||||||||||||||||| Sbjct: 696 tgcatgctatctatcgaagc 715
>gb|AC115906.6| Mus musculus chromosome 8, clone RP24-476M14, complete sequence Length = 145246 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 56 aaaccatttttacatctaa 74 ||||||||||||||||||| Sbjct: 53071 aaaccatttttacatctaa 53089
>ref|XM_735018.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000095.04.0) partial mRNA Length = 1602 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 40 aacaatcaatcacctcaaa 58 ||||||||||||||||||| Sbjct: 853 aacaatcaatcacctcaaa 871
>emb|AL596173.1| Listeria innocua Clip11262 complete genome, segment 11/12 Length = 305050 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 58 accatttttacatctaacg 76 ||||||||||||||||||| Sbjct: 291128 accatttttacatctaacg 291110
>gb|AC120387.5| Mus musculus chromosome 8, clone RP24-299O22, complete sequence Length = 163623 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 56 aaaccatttttacatctaa 74 ||||||||||||||||||| Sbjct: 134066 aaaccatttttacatctaa 134084
>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome Length = 5057531 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 102 tgctatctatcgaagcttt 120 ||||||||||||||||||| Sbjct: 4892335 tgctatctatcgaagcttt 4892353
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 51 acctcaaaccatttttaca 69 ||||||||||||||||||| Sbjct: 1469673 acctcaaaccatttttaca 1469655
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 51 acctcaaaccatttttaca 69 ||||||||||||||||||| Sbjct: 479184 acctcaaaccatttttaca 479166
>gb|AY183740.1| Latimeria menadoensis HoxB13 gene, exon 2 and partial cds Length = 989 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 117 ctttgactcggcggttttg 135 ||||||||||||||||||| Sbjct: 657 ctttgactcggcggttttg 639
>dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017C12 Length = 135356 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 51 acctcaaaccatttttaca 69 ||||||||||||||||||| Sbjct: 75425 acctcaaaccatttttaca 75407
>gb|AC007751.3|AC007751 Homo sapiens, clone 5_A_11, complete sequence Length = 158963 Score = 38.2 bits (19), Expect = 6.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 88 aacaacggcatgcatgctatcta 110 |||||| |||||||||||||||| Sbjct: 65690 aacaactgcatgcatgctatcta 65668
>dbj|AP006544.1| Homo sapiens genomic DNA, chromosome 8q22.3, clone: KB1575F09, complete sequence Length = 126600 Score = 38.2 bits (19), Expect = 6.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 88 aacaacggcatgcatgctatcta 110 |||||| |||||||||||||||| Sbjct: 30672 aacaactgcatgcatgctatcta 30694
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 51 acctcaaaccatttttaca 69 ||||||||||||||||||| Sbjct: 1469673 acctcaaaccatttttaca 1469655
>emb|BX000498.1|CNS08CDO Oryza sativa chromosome 12, . BAC OSJNBa0009F13 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183385 Score = 38.2 bits (19), Expect = 6.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 51 acctcaaaccatttttaca 69 ||||||||||||||||||| Sbjct: 156059 acctcaaaccatttttaca 156077 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 850,171 Number of Sequences: 3902068 Number of extensions: 850171 Number of successful extensions: 47721 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47596 Number of HSP's gapped (non-prelim): 125 length of query: 135 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 114 effective length of database: 17,151,101,840 effective search space: 1955225609760 effective search space used: 1955225609760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)