ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY431550.1| Aedes aegypti ASAP ID: 36969 tetraspanin mRNA seq... 40 1.6
2gb|DQ440291.1| Aedes aegypti clone AET-3701 tetraspanin mRNA, co... 40 1.6
3gb|AC115906.6| Mus musculus chromosome 8, clone RP24-476M14, com... 38 6.4
4ref|XM_735018.1| Plasmodium chabaudi chabaudi hypothetical prote... 38 6.4
5emb|AL596173.1| Listeria innocua Clip11262 complete genome, segm... 38 6.4
6gb|AC120387.5| Mus musculus chromosome 8, clone RP24-299O22, com... 38 6.4
7gb|CP000282.1| Saccharophagus degradans 2-40, complete genome 38 6.4
8dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.4
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.4
10gb|AY183740.1| Latimeria menadoensis HoxB13 gene, exon 2 and par... 38 6.4
11dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.4
12gb|AC007751.3|AC007751 Homo sapiens, clone 5_A_11, complete sequ... 38 6.4
13dbj|AP006544.1| Homo sapiens genomic DNA, chromosome 8q22.3, clo... 38 6.4
14gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 6.4
15emb|BX000498.1|CNS08CDO Oryza sativa chromosome 12, . BAC OSJNBa... 38 6.4

>gb|AY431550.1| Aedes aegypti ASAP ID: 36969 tetraspanin mRNA sequence
          Length = 772

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 98  tgcatgctatctatcgaagc 117
           ||||||||||||||||||||
Sbjct: 729 tgcatgctatctatcgaagc 748



to top

>gb|DQ440291.1| Aedes aegypti clone AET-3701 tetraspanin mRNA, complete cds
          Length = 750

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 98  tgcatgctatctatcgaagc 117
           ||||||||||||||||||||
Sbjct: 696 tgcatgctatctatcgaagc 715



to top

>gb|AC115906.6| Mus musculus chromosome 8, clone RP24-476M14, complete sequence
          Length = 145246

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 56    aaaccatttttacatctaa 74
             |||||||||||||||||||
Sbjct: 53071 aaaccatttttacatctaa 53089



to top

>ref|XM_735018.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000095.04.0)
           partial mRNA
          Length = 1602

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 40  aacaatcaatcacctcaaa 58
           |||||||||||||||||||
Sbjct: 853 aacaatcaatcacctcaaa 871



to top

>emb|AL596173.1| Listeria innocua Clip11262 complete genome, segment 11/12
          Length = 305050

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 58     accatttttacatctaacg 76
              |||||||||||||||||||
Sbjct: 291128 accatttttacatctaacg 291110



to top

>gb|AC120387.5| Mus musculus chromosome 8, clone RP24-299O22, complete sequence
          Length = 163623

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 56     aaaccatttttacatctaa 74
              |||||||||||||||||||
Sbjct: 134066 aaaccatttttacatctaa 134084



to top

>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 102     tgctatctatcgaagcttt 120
               |||||||||||||||||||
Sbjct: 4892335 tgctatctatcgaagcttt 4892353



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 51      acctcaaaccatttttaca 69
               |||||||||||||||||||
Sbjct: 1469673 acctcaaaccatttttaca 1469655



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 51     acctcaaaccatttttaca 69
              |||||||||||||||||||
Sbjct: 479184 acctcaaaccatttttaca 479166



to top

>gb|AY183740.1| Latimeria menadoensis HoxB13 gene, exon 2 and partial cds
          Length = 989

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 117 ctttgactcggcggttttg 135
           |||||||||||||||||||
Sbjct: 657 ctttgactcggcggttttg 639



to top

>dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0017C12
          Length = 135356

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 51    acctcaaaccatttttaca 69
             |||||||||||||||||||
Sbjct: 75425 acctcaaaccatttttaca 75407



to top

>gb|AC007751.3|AC007751 Homo sapiens, clone 5_A_11, complete sequence
          Length = 158963

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 88    aacaacggcatgcatgctatcta 110
             |||||| ||||||||||||||||
Sbjct: 65690 aacaactgcatgcatgctatcta 65668



to top

>dbj|AP006544.1| Homo sapiens genomic DNA, chromosome 8q22.3, clone: KB1575F09, complete
             sequence
          Length = 126600

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 88    aacaacggcatgcatgctatcta 110
             |||||| ||||||||||||||||
Sbjct: 30672 aacaactgcatgcatgctatcta 30694



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 51      acctcaaaccatttttaca 69
               |||||||||||||||||||
Sbjct: 1469673 acctcaaaccatttttaca 1469655



to top

>emb|BX000498.1|CNS08CDO Oryza sativa chromosome 12, . BAC OSJNBa0009F13 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 183385

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 51     acctcaaaccatttttaca 69
              |||||||||||||||||||
Sbjct: 156059 acctcaaaccatttttaca 156077


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 850,171
Number of Sequences: 3902068
Number of extensions: 850171
Number of successful extensions: 47721
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47596
Number of HSP's gapped (non-prelim): 125
length of query: 135
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 114
effective length of database: 17,151,101,840
effective search space: 1955225609760
effective search space used: 1955225609760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top