ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CSD_PSEPK (Q9Z408) Probable cysteine desulfurase (EC 2.8.1.7) 31 0.74
2CUT9_SCHPO (P41889) 20S cyclosome/APC complex protein cut9 (Cell... 28 8.2

>CSD_PSEPK (Q9Z408) Probable cysteine desulfurase (EC 2.8.1.7)|
          Length = 401

 Score = 31.2 bits (69), Expect = 0.74
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +3

Query: 96  QLSTGNEILMSSIELHYILVPTLTLAHRHRQHFRVPRLSMLG 221
           +L  G+EI +S++E H  L+P   LAHR   H  V  L   G
Sbjct: 106 RLEAGDEIAISALEHHANLLPWQQLAHRRNLHLVVLPLDAHG 147



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>CUT9_SCHPO (P41889) 20S cyclosome/APC complex protein cut9 (Cell untimely torn|
           protein 9)
          Length = 671

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 42  YRIIKIYEIGTEKTHPAVQLSTGNEILMSSIELHYI--LVPTLTLAHRH 182
           YR +K+Y+   +  +  + LST +  + ++I L Y+   +P L + H H
Sbjct: 526 YRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLH 574


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,665,044
Number of Sequences: 219361
Number of extensions: 541560
Number of successful extensions: 1280
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 80,573,946
effective HSP length: 57
effective length of database: 68,070,369
effective search space used: 1633688856
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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