ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YAT5_SCHPO (Q10151) Hypothetical protein C1D4.05c in chromosome I 28 5.5

>YAT5_SCHPO (Q10151) Hypothetical protein C1D4.05c in chromosome I|
          Length = 387

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 17/55 (30%)
 Frame = -3

Query: 115 SFFLP-----PFVVPVLCCLEY------------IMSELYLYTMTPTIYIRQLLH 2
           +FF+P     PF+V +L CL Y            ++S L   T  P IY+  ++H
Sbjct: 218 TFFVPLAMAYPFIVAILQCLHYGLSRRKHTFKINLLSALKHATALPVIYLSAIIH 272


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,105,299
Number of Sequences: 219361
Number of extensions: 192063
Number of successful extensions: 492
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 80,573,946
effective HSP length: 14
effective length of database: 77,502,892
effective search space used: 1860069408
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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