ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl40f08 |
|---|---|
| Clone Library Name | barley_pub |
>R1AB_BSCR3 (Q3I5J6) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:| Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains: Leader protein; p65 homolog; NSP1 (EC 3.4.22.-) (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC 3.4.22.-) (3CL-PRO) (3 Length = 7071 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = -1 Query: 119 FVCVEQSWYIRKIFW*GHVYMVIAETDCFI--CCSCYWGI 6 FVCVE Y +F G+ I CF+ CC CY+G+ Sbjct: 3735 FVCVE---YYPLLFITGNTLQCIMLVYCFLGYCCCCYFGL 3771
>R1AB_CVHSA (P59641) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:| Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains: Leader protein; p65 homolog; NSP1 (EC 3.4.22.-) (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC 3.4.22.-) (3CL-PRO) (3 Length = 7073 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = -1 Query: 119 FVCVEQSWYIRKIFW*GHVYMVIAETDCFI--CCSCYWGI 6 FVCVE Y +F G+ I CF+ CC CY+G+ Sbjct: 3737 FVCVE---YYPLLFITGNTLQCIMLVYCFLGYCCCCYFGL 3773
>VGLL4_MOUSE (Q80V24) Transcription cofactor vestigial-like protein 4 (Vgl-4)| Length = 287 Score = 28.1 bits (61), Expect = 5.5 Identities = 21/65 (32%), Positives = 27/65 (41%) Frame = +3 Query: 3 SNAPITGAANKAISLSYNHVYMPLPKYFSYVPALLYTNKATSILVGSITLRTMKSACLLR 182 S +PI AA A+SL H+Y LP AL K +S S R ++ Sbjct: 107 SRSPIERAAAPAVSLHGGHLYASLPSLMEQPLAL---TKNSSDTGRSAVERQQNRPSVIT 163 Query: 183 CQGAG 197 C AG Sbjct: 164 CASAG 168
>RP1_PAPHA (Q8MJ06) Oxygen-regulated protein 1 (Retinitis pigmentosa RP1| protein homolog) Length = 2152 Score = 27.7 bits (60), Expect = 7.2 Identities = 10/36 (27%), Positives = 22/36 (61%) Frame = +2 Query: 191 SRQDGKPQRIYPSANHRTDCQQVATSIDLGTQMTIY 298 +R G QR+YP N +++ ++++T + ++ IY Sbjct: 241 ARLPGISQRVYPKGNAKSESRKISTHMSSSSRSQIY 276
>KHL15_BRARE (Q6DEL7) Kelch-like protein 15| Length = 604 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/47 (34%), Positives = 21/47 (44%) Frame = -1 Query: 263 LLLVDSQSCGWQKDIFFEAFRLACSLTTKQAC*FHCPECDRPH*YRC 123 +L D + W++D E R+ C L Q C H PE H RC Sbjct: 560 ILTFDPEENKWKED---EYPRMPCKLDGLQVCSLHFPEYVLEHVRRC 603
>RP1_HUMAN (P56715) Oxygen-regulated protein 1 (Retinitis pigmentosa RP1| protein) (Retinitis pigmentosa 1 protein) Length = 2156 Score = 27.7 bits (60), Expect = 7.2 Identities = 10/36 (27%), Positives = 22/36 (61%) Frame = +2 Query: 191 SRQDGKPQRIYPSANHRTDCQQVATSIDLGTQMTIY 298 +R G QR+YP N +++ ++++T + ++ IY Sbjct: 241 ARLPGISQRVYPKGNAKSESRKISTHMSSSSRSQIY 276
>SDR1_PICAB (Q08632) Short-chain type dehydrogenase/reductase (EC 1.-.-.-)| Length = 271 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/54 (24%), Positives = 26/54 (48%) Frame = +3 Query: 15 ITGAANKAISLSYNHVYMPLPKYFSYVPALLYTNKATSILVGSITLRTMKSACL 176 + G + I++S + V MP+P+Y +Y + T IL + + + C+ Sbjct: 154 VRGGGGRIINISSSLVAMPIPRYGAYTASKAAVEMMTRILAQELRGTQITANCV 207
>ACEK_YERPS (Q664W4) Isocitrate dehydrogenase kinase/phosphatase (EC 2.7.11.5)| (EC 3.1.3.-) (IDH kinase/phosphatase) (IDHK/P) Length = 575 Score = 27.7 bits (60), Expect = 7.2 Identities = 20/59 (33%), Positives = 27/59 (45%) Frame = +3 Query: 48 SYNHVYMPLPKYFSYVPALLYTNKATSILVGSITLRTMKSACLLRCQGAGKTESLKEYI 224 SY VY+PLP + K+T+ L +I CQ GKTES +EY+ Sbjct: 255 SYFMVYVPLPAAMVEWLREILPGKSTAELYTAIG-----------CQKHGKTESYREYL 302
>ACEK_YERPE (Q8ZAR7) Isocitrate dehydrogenase kinase/phosphatase (EC 2.7.11.5)| (EC 3.1.3.-) (IDH kinase/phosphatase) (IDHK/P) Length = 575 Score = 27.7 bits (60), Expect = 7.2 Identities = 20/59 (33%), Positives = 27/59 (45%) Frame = +3 Query: 48 SYNHVYMPLPKYFSYVPALLYTNKATSILVGSITLRTMKSACLLRCQGAGKTESLKEYI 224 SY VY+PLP + K+T+ L +I CQ GKTES +EY+ Sbjct: 255 SYFMVYVPLPAAMVEWLREILPGKSTAELYTAIG-----------CQKHGKTESYREYL 302
>CCNA_SPISO (P04962) G2/mitotic-specific cyclin-A| Length = 422 Score = 27.7 bits (60), Expect = 7.2 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 11/81 (13%) Frame = +3 Query: 15 ITGAANKAISLSYNHVYMPLPKYFSYVPALLYTNKAT--------SILVGSITLRTMKSA 170 + GAA+ ++ Y +Y P K F+Y+ YT++ +L + + T Sbjct: 240 LVGAASMFLAAKYEEIYPPDVKEFAYITDDTYTSQQVLRMEHLILKVLTFDVAVPTTNWF 299 Query: 171 C---LLRCQGAGKTESLKEYI 224 C L C K +SL ++ Sbjct: 300 CEDFLKSCDADDKLKSLTMFL 320
>VPP1_RAT (P25286) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 1 (V-ATPase 116-kDa isoform a1) (Clathrin-coated vesicle/synaptic vesicle proton pump 116 kDa subunit) (Vacuolar proton pump subunit 1) (Vacuolar adenosine triphosphatase su Length = 838 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%) Frame = +3 Query: 39 ISLS-YNHVYM--PLPKYFSYVPALLYTNKATSILV 137 +SLS +NH+Y PL YF ++P +++ + LV Sbjct: 553 VSLSLFNHIYFKKPLNIYFGFIPEIIFMSSLFGYLV 588
>VPP1_MOUSE (Q9Z1G4) Vacuolar proton translocating ATPase 116 kDa subunit a| isoform 1 (V-ATPase 116-kDa isoform a1) (Clathrin-coated vesicle/synaptic vesicle proton pump 116 kDa subunit) (Vacuolar proton pump subunit 1) (Vacuolar adenosine triphosphatase Length = 839 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%) Frame = +3 Query: 39 ISLS-YNHVYM--PLPKYFSYVPALLYTNKATSILV 137 +SLS +NH+Y PL YF ++P +++ + LV Sbjct: 560 VSLSLFNHIYFKKPLNIYFGFIPEIIFMSSLFGYLV 595
>CR7AB_BACUA (Q45707) Pesticidal crystal protein cry7Ab (Insecticidal| delta-endotoxin CryVIIA(b)) (Crystaline entomocidal protoxin) (130 kDa crystal protein) Length = 1138 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%) Frame = +2 Query: 80 IFFLCT---SFALHKQSNIYTSGVYHTQDNEIS 169 +F+ C SF +QSN+YT+G+Y IS Sbjct: 350 LFYWCVHKVSFKKSEQSNLYTTGIYGKTSGYIS 382 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,827,438 Number of Sequences: 219361 Number of extensions: 932951 Number of successful extensions: 2270 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2226 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2270 length of database: 80,573,946 effective HSP length: 95 effective length of database: 59,734,651 effective search space used: 1433631624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
