Clone Name | rbastl40f07 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_074635.1| Caenorhabditis elegans F14H3.2 (F14H3.2) mRNA, complete cds Length = 1305 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Plus Query: 102 ggccgagagaaattttatgaaggc 125 |||||||||||||||||||||||| Sbjct: 1225 ggccgagagaaattttatgaaggc 1248
>emb|Z83105.1|CEF14H3 Caenorhabditis elegans Cosmid F14H3, complete sequence Length = 26667 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Plus Query: 102 ggccgagagaaattttatgaaggc 125 |||||||||||||||||||||||| Sbjct: 2426 ggccgagagaaattttatgaaggc 2449
>emb|AL162831.6|CNS01RI2 Human chromosome 14 DNA sequence BAC R-1077A2 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 208102 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 169 ttctgatgatcacaatctatctg 191 ||||||||||||||||||||||| Sbjct: 190892 ttctgatgatcacaatctatctg 190870
>emb|AL161757.4|CNS01RHK Human chromosome 14 DNA sequence BAC R-1085N6 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 242832 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 169 ttctgatgatcacaatctatctg 191 ||||||||||||||||||||||| Sbjct: 93659 ttctgatgatcacaatctatctg 93637
>gb|AC123722.8| Mus musculus chromosome 5, clone RP23-424O22, complete sequence Length = 205851 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 gcatagggagcacagcacagg 157 ||||||||||||||||||||| Sbjct: 71883 gcatagggagcacagcacagg 71903 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 gcatagggagcacagcacagg 157 ||||||||||||||||||||| Sbjct: 71841 gcatagggagcacagcacagg 71861 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 gcatagggagcacagcacag 156 |||||||||||||||||||| Sbjct: 71813 gcatagggagcacagcacag 71832 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 catagggagcacagcacagg 157 |||||||||||||||||||| Sbjct: 71772 catagggagcacagcacagg 71791
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 410 tcatatggcgtatatccggtc 430 ||||||||||||||||||||| Sbjct: 9579958 tcatatggcgtatatccggtc 9579938 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 atgaaatacaaggtacagag 42 |||||||||||||||||||| Sbjct: 10362748 atgaaatacaaggtacagag 10362729 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 acaccagcttattggaatgtatac 274 ||||||||||||||||| |||||| Sbjct: 9580098 acaccagcttattggaacgtatac 9580075
>gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genomic sequence, complete sequence Length = 165113 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 410 tcatatggcgtatatccggtc 430 ||||||||||||||||||||| Sbjct: 857 tcatatggcgtatatccggtc 837 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 acaccagcttattggaatgtatac 274 ||||||||||||||||| |||||| Sbjct: 997 acaccagcttattggaacgtatac 974
>gb|AC021483.11| Homo sapiens, clone RP11-38G5, complete sequence Length = 163065 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 311 aaagctgtttatactgagtgc 331 ||||||||||||||||||||| Sbjct: 9909 aaagctgtttatactgagtgc 9929
>gb|AC026826.7| Homo sapiens, clone RP11-591L14, complete sequence Length = 169462 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 311 aaagctgtttatactgagtgc 331 ||||||||||||||||||||| Sbjct: 92217 aaagctgtttatactgagtgc 92237
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 410 tcatatggcgtatatccggtc 430 ||||||||||||||||||||| Sbjct: 9578079 tcatatggcgtatatccggtc 9578059 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 atgaaatacaaggtacagag 42 |||||||||||||||||||| Sbjct: 10360849 atgaaatacaaggtacagag 10360830 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 acaccagcttattggaatgtatac 274 ||||||||||||||||| |||||| Sbjct: 9578219 acaccagcttattggaacgtatac 9578196
>gb|AC137069.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence Length = 131709 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 410 tcatatggcgtatatccggtc 430 ||||||||||||||||||||| Sbjct: 32728 tcatatggcgtatatccggtc 32748 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 251 acaccagcttattggaatgtatac 274 ||||||||||||||||| |||||| Sbjct: 32588 acaccagcttattggaacgtatac 32611
>dbj|AK100495.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099A04, full insert sequence Length = 2618 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 410 tcatatggcgtatatccggtc 430 ||||||||||||||||||||| Sbjct: 2256 tcatatggcgtatatccggtc 2236 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 acaccagcttattggaatgtatac 274 ||||||||||||||||| |||||| Sbjct: 2396 acaccagcttattggaacgtatac 2373
>gb|AC154483.2| Mus musculus BAC clone RP24-113B3 from chromosome 17, complete sequence Length = 182923 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 catattaacaaaaggtagaaaaaa 98 |||||||||||||| ||||||||| Sbjct: 145427 catattaacaaaagatagaaaaaa 145404
>gb|AY490247.1| Lycopersicon esculentum CONSTANS interacting protein 5 (CIP5) mRNA, partial cds Length = 2036 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 cttctcagctatcagatgaa 27 |||||||||||||||||||| Sbjct: 1766 cttctcagctatcagatgaa 1785
>emb|AL163280.2|HS21C080 Homo sapiens chromosome 21 segment HS21C080 Length = 340000 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 tatacccacagcacctggag 306 |||||||||||||||||||| Sbjct: 76123 tatacccacagcacctggag 76142
>emb|AL590489.11| Human DNA sequence from clone RP11-412O4 on chromosome 6q16.2-21 Contains part of the C6orf210 gene for chromosome 6 open reading frame 210, complete sequence Length = 130146 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 cacagcatattaacaaaagg 89 |||||||||||||||||||| Sbjct: 58170 cacagcatattaacaaaagg 58189
>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0039F10, complete sequence Length = 139714 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 atgaaatacaaggtacagag 42 |||||||||||||||||||| Sbjct: 19301 atgaaatacaaggtacagag 19282
>emb|AJ421825.1|SAU421825 Stigmatella aurantiaca ORF8, ORF7, ORF6, ORF5, ORF4, ORF3, ORF2, ORF1, stiA gene, stiB gene, stiC gene, stiD gene, stiE gene, stiF gene, stiG gene, stiH gene, stiJ gene, stiK gene, stiL gene and ORF9 Length = 66808 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 tctgctcctggctcctgccc 242 |||||||||||||||||||| Sbjct: 55508 tctgctcctggctcctgccc 55489
>emb|BX548053.7| Zebrafish DNA sequence from clone DKEY-189G17 in linkage group 9, complete sequence Length = 210830 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 72 cagcatattaacaaaaggtagaaaaaagaagg 103 ||||| |||||||| ||||||||||| ||||| Sbjct: 50510 cagcacattaacaataggtagaaaaatgaagg 50541
>emb|BX842612.10| Zebrafish DNA sequence from clone DKEY-5N18 in linkage group 20 Contains the gene for a novel protein similar to human and mouse complement component 1, q subcomponent-like 1 (C1QL1) and three CpG islands, complete sequence Length = 141139 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 gagcacagcacaggctgcat 163 |||||||||||||||||||| Sbjct: 42942 gagcacagcacaggctgcat 42961
>emb|BX323855.5| Zebrafish DNA sequence from clone CH211-134O20 in linkage group 7, complete sequence Length = 124192 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 catattaacaaaaggtagaaaaaa 98 |||||||| ||||||||||||||| Sbjct: 75698 catattaaaaaaaggtagaaaaaa 75675
>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone OSJNBb0036D03, from chromosome 3, complete sequence Length = 125800 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 atgaaatacaaggtacagag 42 |||||||||||||||||||| Sbjct: 76214 atgaaatacaaggtacagag 76195
>gb|AF064860.2| Homo sapiens chromosome 21 clone PAC 70I24 map 21q22.3, complete sequence Length = 170121 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 tatacccacagcacctggag 306 |||||||||||||||||||| Sbjct: 2714 tatacccacagcacctggag 2733
>gb|AC131971.9| Homo sapiens chromosome 11, clone CTC-343N3, complete sequence Length = 176226 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 accccatatacccacagcac 300 |||||||||||||||||||| Sbjct: 466 accccatatacccacagcac 485
>gb|AC108448.12| Homo sapiens chromosome 11, clone CTD-2544D21, complete sequence Length = 198599 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 accccatatacccacagcac 300 |||||||||||||||||||| Sbjct: 57855 accccatatacccacagcac 57836
>dbj|AK067646.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112D16, full insert sequence Length = 2890 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 atgaaatacaaggtacagag 42 |||||||||||||||||||| Sbjct: 2730 atgaaatacaaggtacagag 2711
>dbj|AK058471.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-B10, full insert sequence Length = 1364 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 atgaaatacaaggtacagag 42 |||||||||||||||||||| Sbjct: 1296 atgaaatacaaggtacagag 1277
>emb|AL954226.2|PTB126M21 Pan troglodytes chromosome 22 BAC PTB-126M21, complete sequence Length = 188320 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 tatacccacagcacctggag 306 |||||||||||||||||||| Sbjct: 121185 tatacccacagcacctggag 121204
>gb|AF121897.4| Homo sapiens chromosome 21 clone RP1-160L9 map 21q22.2, complete sequence Length = 132088 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 tatacccacagcacctggag 306 |||||||||||||||||||| Sbjct: 80363 tatacccacagcacctggag 80382 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,005,013 Number of Sequences: 3902068 Number of extensions: 4005013 Number of successful extensions: 69772 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69647 Number of HSP's gapped (non-prelim): 125 length of query: 430 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 408 effective length of database: 17,147,199,772 effective search space: 6996057506976 effective search space used: 6996057506976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)