ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_074635.1| Caenorhabditis elegans F14H3.2 (F14H3.2) mRNA, ... 48 0.024
2emb|Z83105.1|CEF14H3 Caenorhabditis elegans Cosmid F14H3, comple... 48 0.024
3emb|AL162831.6|CNS01RI2 Human chromosome 14 DNA sequence BAC R-1... 46 0.094
4emb|AL161757.4|CNS01RHK Human chromosome 14 DNA sequence BAC R-1... 46 0.094
5gb|AC123722.8| Mus musculus chromosome 5, clone RP23-424O22, com... 42 1.5
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.5
7gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genom... 42 1.5
8gb|AC021483.11| Homo sapiens, clone RP11-38G5, complete sequence 42 1.5
9gb|AC026826.7| Homo sapiens, clone RP11-591L14, complete sequence 42 1.5
10dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
11gb|AC137069.2| Genomic sequence for Oryza sativa, Nipponbare str... 42 1.5
12dbj|AK100495.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
13gb|AC154483.2| Mus musculus BAC clone RP24-113B3 from chromosome... 40 5.8
14gb|AY490247.1| Lycopersicon esculentum CONSTANS interacting prot... 40 5.8
15emb|AL163280.2|HS21C080 Homo sapiens chromosome 21 segment HS21C080 40 5.8
16emb|AL590489.11| Human DNA sequence from clone RP11-412O4 on chr... 40 5.8
17gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
18emb|AJ421825.1|SAU421825 Stigmatella aurantiaca ORF8, ORF7, ORF6... 40 5.8
19emb|BX548053.7| Zebrafish DNA sequence from clone DKEY-189G17 in... 40 5.8
20emb|BX842612.10| Zebrafish DNA sequence from clone DKEY-5N18 in ... 40 5.8
21emb|BX323855.5| Zebrafish DNA sequence from clone CH211-134O20 i... 40 5.8
22gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare sta... 40 5.8
23gb|AF064860.2| Homo sapiens chromosome 21 clone PAC 70I24 map 21... 40 5.8
24gb|AC131971.9| Homo sapiens chromosome 11, clone CTC-343N3, comp... 40 5.8
25gb|AC108448.12| Homo sapiens chromosome 11, clone CTD-2544D21, c... 40 5.8
26dbj|AK067646.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
27dbj|AK058471.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
28emb|AL954226.2|PTB126M21 Pan troglodytes chromosome 22 BAC PTB-1... 40 5.8
29gb|AF121897.4| Homo sapiens chromosome 21 clone RP1-160L9 map 21... 40 5.8

>ref|NM_074635.1| Caenorhabditis elegans F14H3.2 (F14H3.2) mRNA, complete cds
          Length = 1305

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 102  ggccgagagaaattttatgaaggc 125
            ||||||||||||||||||||||||
Sbjct: 1225 ggccgagagaaattttatgaaggc 1248



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>emb|Z83105.1|CEF14H3 Caenorhabditis elegans Cosmid F14H3, complete sequence
          Length = 26667

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 102  ggccgagagaaattttatgaaggc 125
            ||||||||||||||||||||||||
Sbjct: 2426 ggccgagagaaattttatgaaggc 2449



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>emb|AL162831.6|CNS01RI2 Human chromosome 14 DNA sequence BAC R-1077A2 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 208102

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 169    ttctgatgatcacaatctatctg 191
              |||||||||||||||||||||||
Sbjct: 190892 ttctgatgatcacaatctatctg 190870



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>emb|AL161757.4|CNS01RHK Human chromosome 14 DNA sequence BAC R-1085N6 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 242832

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 169   ttctgatgatcacaatctatctg 191
             |||||||||||||||||||||||
Sbjct: 93659 ttctgatgatcacaatctatctg 93637



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>gb|AC123722.8| Mus musculus chromosome 5, clone RP23-424O22, complete sequence
          Length = 205851

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 137   gcatagggagcacagcacagg 157
             |||||||||||||||||||||
Sbjct: 71883 gcatagggagcacagcacagg 71903



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 137   gcatagggagcacagcacagg 157
             |||||||||||||||||||||
Sbjct: 71841 gcatagggagcacagcacagg 71861



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   gcatagggagcacagcacag 156
             ||||||||||||||||||||
Sbjct: 71813 gcatagggagcacagcacag 71832



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   catagggagcacagcacagg 157
             ||||||||||||||||||||
Sbjct: 71772 catagggagcacagcacagg 71791



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 410     tcatatggcgtatatccggtc 430
               |||||||||||||||||||||
Sbjct: 9579958 tcatatggcgtatatccggtc 9579938



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 23       atgaaatacaaggtacagag 42
                ||||||||||||||||||||
Sbjct: 10362748 atgaaatacaaggtacagag 10362729



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 251     acaccagcttattggaatgtatac 274
               ||||||||||||||||| ||||||
Sbjct: 9580098 acaccagcttattggaacgtatac 9580075



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>gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genomic sequence,
           complete sequence
          Length = 165113

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 410 tcatatggcgtatatccggtc 430
           |||||||||||||||||||||
Sbjct: 857 tcatatggcgtatatccggtc 837



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 251 acaccagcttattggaatgtatac 274
           ||||||||||||||||| ||||||
Sbjct: 997 acaccagcttattggaacgtatac 974



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>gb|AC021483.11| Homo sapiens, clone RP11-38G5, complete sequence
          Length = 163065

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 311  aaagctgtttatactgagtgc 331
            |||||||||||||||||||||
Sbjct: 9909 aaagctgtttatactgagtgc 9929



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>gb|AC026826.7| Homo sapiens, clone RP11-591L14, complete sequence
          Length = 169462

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 311   aaagctgtttatactgagtgc 331
             |||||||||||||||||||||
Sbjct: 92217 aaagctgtttatactgagtgc 92237



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 410     tcatatggcgtatatccggtc 430
               |||||||||||||||||||||
Sbjct: 9578079 tcatatggcgtatatccggtc 9578059



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 23       atgaaatacaaggtacagag 42
                ||||||||||||||||||||
Sbjct: 10360849 atgaaatacaaggtacagag 10360830



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 251     acaccagcttattggaatgtatac 274
               ||||||||||||||||| ||||||
Sbjct: 9578219 acaccagcttattggaacgtatac 9578196



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>gb|AC137069.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0009C19, from chromosome 3, complete sequence
          Length = 131709

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 410   tcatatggcgtatatccggtc 430
             |||||||||||||||||||||
Sbjct: 32728 tcatatggcgtatatccggtc 32748



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 251   acaccagcttattggaatgtatac 274
             ||||||||||||||||| ||||||
Sbjct: 32588 acaccagcttattggaacgtatac 32611



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>dbj|AK100495.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099A04, full
            insert sequence
          Length = 2618

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 410  tcatatggcgtatatccggtc 430
            |||||||||||||||||||||
Sbjct: 2256 tcatatggcgtatatccggtc 2236



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 251  acaccagcttattggaatgtatac 274
            ||||||||||||||||| ||||||
Sbjct: 2396 acaccagcttattggaacgtatac 2373



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>gb|AC154483.2| Mus musculus BAC clone RP24-113B3 from chromosome 17, complete sequence
          Length = 182923

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 75     catattaacaaaaggtagaaaaaa 98
              |||||||||||||| |||||||||
Sbjct: 145427 catattaacaaaagatagaaaaaa 145404



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>gb|AY490247.1| Lycopersicon esculentum CONSTANS interacting protein 5 (CIP5) mRNA,
            partial cds
          Length = 2036

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 8    cttctcagctatcagatgaa 27
            ||||||||||||||||||||
Sbjct: 1766 cttctcagctatcagatgaa 1785



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>emb|AL163280.2|HS21C080 Homo sapiens chromosome 21 segment HS21C080
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 287   tatacccacagcacctggag 306
             ||||||||||||||||||||
Sbjct: 76123 tatacccacagcacctggag 76142



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>emb|AL590489.11| Human DNA sequence from clone RP11-412O4 on chromosome 6q16.2-21
             Contains part of the C6orf210 gene for chromosome 6 open
             reading frame 210, complete sequence
          Length = 130146

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    cacagcatattaacaaaagg 89
             ||||||||||||||||||||
Sbjct: 58170 cacagcatattaacaaaagg 58189



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>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0039F10, complete sequence
          Length = 139714

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    atgaaatacaaggtacagag 42
             ||||||||||||||||||||
Sbjct: 19301 atgaaatacaaggtacagag 19282



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>emb|AJ421825.1|SAU421825 Stigmatella aurantiaca ORF8, ORF7, ORF6, ORF5, ORF4, ORF3, ORF2, ORF1,
             stiA gene, stiB gene, stiC gene, stiD gene, stiE gene,
             stiF gene, stiG gene, stiH gene, stiJ gene, stiK gene,
             stiL gene and ORF9
          Length = 66808

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 223   tctgctcctggctcctgccc 242
             ||||||||||||||||||||
Sbjct: 55508 tctgctcctggctcctgccc 55489



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>emb|BX548053.7| Zebrafish DNA sequence from clone DKEY-189G17 in linkage group 9,
             complete sequence
          Length = 210830

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 72    cagcatattaacaaaaggtagaaaaaagaagg 103
             ||||| |||||||| ||||||||||| |||||
Sbjct: 50510 cagcacattaacaataggtagaaaaatgaagg 50541



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>emb|BX842612.10| Zebrafish DNA sequence from clone DKEY-5N18 in linkage group 20
             Contains the gene for a novel protein similar to human and
             mouse complement component 1, q subcomponent-like 1
             (C1QL1) and three CpG islands, complete sequence
          Length = 141139

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   gagcacagcacaggctgcat 163
             ||||||||||||||||||||
Sbjct: 42942 gagcacagcacaggctgcat 42961



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>emb|BX323855.5| Zebrafish DNA sequence from clone CH211-134O20 in linkage group 7,
             complete sequence
          Length = 124192

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 75    catattaacaaaaggtagaaaaaa 98
             |||||||| |||||||||||||||
Sbjct: 75698 catattaaaaaaaggtagaaaaaa 75675



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>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone
             OSJNBb0036D03, from chromosome 3, complete sequence
          Length = 125800

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    atgaaatacaaggtacagag 42
             ||||||||||||||||||||
Sbjct: 76214 atgaaatacaaggtacagag 76195



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>gb|AF064860.2| Homo sapiens chromosome 21 clone PAC 70I24 map 21q22.3, complete
            sequence
          Length = 170121

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 287  tatacccacagcacctggag 306
            ||||||||||||||||||||
Sbjct: 2714 tatacccacagcacctggag 2733



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>gb|AC131971.9| Homo sapiens chromosome 11, clone CTC-343N3, complete sequence
          Length = 176226

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 281 accccatatacccacagcac 300
           ||||||||||||||||||||
Sbjct: 466 accccatatacccacagcac 485



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>gb|AC108448.12| Homo sapiens chromosome 11, clone CTD-2544D21, complete sequence
          Length = 198599

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 281   accccatatacccacagcac 300
             ||||||||||||||||||||
Sbjct: 57855 accccatatacccacagcac 57836



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>dbj|AK067646.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112D16, full
            insert sequence
          Length = 2890

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 23   atgaaatacaaggtacagag 42
            ||||||||||||||||||||
Sbjct: 2730 atgaaatacaaggtacagag 2711



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>dbj|AK058471.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-B10, full
            insert sequence
          Length = 1364

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 23   atgaaatacaaggtacagag 42
            ||||||||||||||||||||
Sbjct: 1296 atgaaatacaaggtacagag 1277



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>emb|AL954226.2|PTB126M21 Pan troglodytes chromosome 22 BAC PTB-126M21, complete sequence
          Length = 188320

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 287    tatacccacagcacctggag 306
              ||||||||||||||||||||
Sbjct: 121185 tatacccacagcacctggag 121204



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>gb|AF121897.4| Homo sapiens chromosome 21 clone RP1-160L9 map 21q22.2, complete
             sequence
          Length = 132088

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 287   tatacccacagcacctggag 306
             ||||||||||||||||||||
Sbjct: 80363 tatacccacagcacctggag 80382


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,005,013
Number of Sequences: 3902068
Number of extensions: 4005013
Number of successful extensions: 69772
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69647
Number of HSP's gapped (non-prelim): 125
length of query: 430
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 408
effective length of database: 17,147,199,772
effective search space: 6996057506976
effective search space used: 6996057506976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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