>GAT5B_XENLA (P43696) GATA-binding factor 5-B (Transcription factor xGATA-5B)|
          Length = 388

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 362 ESHMEKTKAPMTPNVLSLGKKPPVGEGAAGKGG 264
           ESH     +P TP+  S    PPVG  +A  GG
Sbjct: 73  ESHAFNASSPHTPSGFSYSHSPPVGNSSARDGG 105

>FHAB_BORPE (P12255) Filamentous hemagglutinin|
          Length = 3590

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 22   ITAAMAVQYFQDYLQFSLTANTN*CSHSKGDWKNRNTVERMHHLLD 159
            +    A++YF+  L  SLTA  N    S   W  ++T E + +LLD
Sbjct: 1907 VRTVSAMEYFKTPLPVSLTALDNRAGLSPATWNFQSTYELLDYLLD 1952

>GAT5A_XENLA (P43695) GATA-binding factor 5-A (Transcription factor xGATA-5A)|
          Length = 390

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -1

Query: 362 ESHMEKTKAPMTPNVLSLGKKPPVGEGAAGKGG 264
           ESH     +P TP   S    PPVG  +A  GG
Sbjct: 72  ESHAFNASSPHTPTGFSYSHSPPVGNSSARDGG 104

>REPS1_MOUSE (O54916) RalBP1-associated Eps domain-containing protein 1|
           (RalBP1-interacting protein 1)
          Length = 743

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = -2

Query: 289 VKEQPAKAGQGGGPTSRVKTKTRQELAGTWRATLPLLPEGGQDYPEDDASSQLYSGFSSL 110
           V EQP + G  G P     +K+            P +P   Q +PE + SS+ +  FS  
Sbjct: 328 VGEQPGEVGYSGSPAEAPPSKS------------PSMPSLNQTWPELNQSSEQWETFSER 375

Query: 109 PSN 101
            S+
Sbjct: 376 SSS 378

>K1043_HUMAN (Q96AY4) TPR repeat-containing protein KIAA1043|
          Length = 1716

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -2

Query: 280  QPAKAGQGGGPTSRVKTKTRQELAGTWRATLPLLPEGGQDYPEDDASSQLYSGFS 116
            +P    +GGGP  R +   R + A   R+TLP      Q  P  +   + Y GFS
Sbjct: 1242 KPEGGSEGGGPGGR-QDHDRSKNAYLQRSTLPRSQLPPQTRPAGNKDEEEYEGFS 1295

>5S_PROFR (Q70AC7) Methylmalonyl-CoA carboxyltransferase 5S subunit (EC|
           2.1.3.1) (Transcarboxylase 5S subunit)
          Length = 505

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 44  NISKIISNSHSRPTQINVHIRRETGKTGIQLRGCI 148
           +I K I +++ + TQIN+H    TG T + L   I
Sbjct: 197 DIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAI 231

>POL2_RRVS (P36324) RNA2 polyprotein (P2) [Contains: P2A protein (2A);|
           Movement protein (2B-MP); Coat protein (2C-CP)]
          Length = 1107

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 27  CGHGGAIFPRLSPILTHGQHKLMFTFE 107
           C     +FP LS +  H QH L+ +FE
Sbjct: 30  CALSSPLFPELSKLDAHSQHHLLASFE 56

>RCOR2_HUMAN (Q8IZ40) REST corepressor 2|
          Length = 523

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 19/65 (29%), Positives = 26/65 (40%)
 Frame = -2

Query: 271 KAGQGGGPTSRVKTKTRQELAGTWRATLPLLPEGGQDYPEDDASSQLYSGFSSLPSNVNI 92
           K   G G  SR + KT              +P GGQ + EDD+S + +S  S +    N 
Sbjct: 7   KPSAGSGILSRSRAKT--------------VPNGGQPHSEDDSSEEEHSHDSMIRVGTNY 52

Query: 91  NLCWP 77
               P
Sbjct: 53  QAVIP 57

>KTNA1_ARATH (Q9SEX2) Katanin p60 ATPase-containing subunit (EC 3.6.4.3)|
           (Katanin p60 subunit) (p60 katanin) (Atp60) (CAD ATPase)
           (Katanin 1) (BOTERO1 protein) (ECTOPIC ROOT HAIR 3
           protein) (FAT ROOT protein) (FRAGILE FIBER 2 protein)
           (AtAAA1)
          Length = 523

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -2

Query: 313 AWARNPQLVKEQPAKAGQGGGPTSRVKTKTRQELAG 206
           AWAR P   +  PA  G  GG TS+     R   AG
Sbjct: 152 AWARGP-TTRTGPASRGGRGGATSKSTAGARSSTAG 186

>ESCA_PHOPA (Q02026) Escargot/snail protein homolog (Fragment)|
          Length = 46

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 32  PWRCNISKIISNSHSRPTQINVHIRRETGKTGIQLRGC 145
           P RC   K+   + SRP  +N HIR  TG+     + C
Sbjct: 7   PCRC---KLCGKAFSRPWLLNGHIRTHTGEKPFSCQHC 41

>LEGB6_VICFA (P16079) Legumin type B [Contains: Legumin type B alpha chain|
           (Legumin type B acidic chain); Legumin type B beta chain
           (Legumin type B basic chain)] (Fragment)
          Length = 329

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -2

Query: 259 GGGPTSRV-KTKTRQELAGTWRATLPLLPEGGQDYPEDDASSQLYSGFSS 113
           GG P     +T+  Q+     + +LP+   GGQ   E+D +S L SGFSS
Sbjct: 39  GGNPEVEFPETQEEQQERHQQKHSLPVGRRGGQHQQEEDGNSVL-SGFSS 87

>POL2_RRVC (Q6W8W3) RNA2 polyprotein (P2) [Contains: P2A protein (2A);|
           Movement protein (2B-MP); Coat protein (2C-CP)]
          Length = 1106

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 27  CGHGGAIFPRLSPILTHGQHKLMFTFE 107
           C     +FP LS +  H QH L+ +FE
Sbjct: 30  CPLSSPLFPELSKLDAHSQHHLLASFE 56

>ORC3_SCHPO (Q10067) Origin recognition complex subunit 3|
          Length = 690

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 1   HSLSPLHITAAMAVQYFQDYLQFSLTANTN*CSHSKGDWKNRNTVERM 144
           H +SPLH+T    V  FQ +++  L           GD ++ N VE+M
Sbjct: 307 HLISPLHLTTLRTVPSFQRHIEQRLEI---------GDLESINYVEKM 345

>PLXB3_MOUSE (Q9QY40) Plexin-B3 precursor (Plexin-6)|
          Length = 1892

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 310  WARNPQLVKEQPAKAGQGGGPTSRVK 233
            +  NPQLV+ +P+ + +GGG   RV+
Sbjct: 990  YTANPQLVEAEPSVSFRGGGRVIRVR 1015


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,992,199
Number of Sequences: 219361
Number of extensions: 949390
Number of successful extensions: 2960
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2960
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)