Clone Name | rbastl40f03 |
---|---|
Clone Library Name | barley_pub |
>gb|AY491010.1| Leishmania major Hut1L protein (Hut1L) gene, complete cds Length = 1732 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 taacgcgcgcggtaccacaca 227 ||||||||||||||||||||| Sbjct: 675 taacgcgcgcggtaccacaca 655
>gb|AC109484.2| Homo sapiens chromosome 5 clone RP11-514A16, complete sequence Length = 187174 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 244 accaaatggctgtaatttgga 264 ||||||||||||||||||||| Sbjct: 4645 accaaatggctgtaatttgga 4625
>gb|AC012188.2|F14L17 Sequence of BAC F14L17 from Arabidopsis thaliana chromosome 1, complete sequence Length = 111686 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 134 acaaaaggatgtagacaaaag 154 ||||||||||||||||||||| Sbjct: 37480 acaaaaggatgtagacaaaag 37500
>ref|NM_194753.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0013J21.12), mRNA Length = 1059 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 tggctgtaatttggacctgt 269 |||||||||||||||||||| Sbjct: 736 tggctgtaatttggacctgt 717
>gb|AC079843.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0013J21, complete sequence Length = 155290 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 tggctgtaatttggacctgt 269 |||||||||||||||||||| Sbjct: 80564 tggctgtaatttggacctgt 80545
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 cagcagtatggatgtaccgt 33 |||||||||||||||||||| Sbjct: 938827 cagcagtatggatgtaccgt 938846
>gb|AC121797.3| Mus musculus BAC clone RP23-424C23 from chromosome 3, complete sequence Length = 177109 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 tgggtacagttctttattgg 79 |||||||||||||||||||| Sbjct: 61035 tgggtacagttctttattgg 61016
>emb|AL590426.6| Human DNA sequence from clone RP11-354K4 on chromosome 6 Contains novel pseudogene, complete sequence Length = 204235 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 tcatggctatgcaaagaacc 321 |||||||||||||||||||| Sbjct: 122766 tcatggctatgcaaagaacc 122747
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 tggctgtaatttggacctgt 269 |||||||||||||||||||| Sbjct: 2102424 tggctgtaatttggacctgt 2102405
>emb|CR450779.7| Zebrafish DNA sequence from clone CH211-258C22 in linkage group 5, complete sequence Length = 179980 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 aacaaaattatgcactgaaa 185 |||||||||||||||||||| Sbjct: 125048 aacaaaattatgcactgaaa 125029
>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 Length = 504369 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 aggcgatgacgggaacaaaa 172 |||||||||||||||||||| Sbjct: 431604 aggcgatgacgggaacaaaa 431623
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 gattattcaccaaatggctg 255 |||||||||||||||||||| Sbjct: 19193185 gattattcaccaaatggctg 19193166
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 tggctgtaatttggacctgt 269 |||||||||||||||||||| Sbjct: 2102424 tggctgtaatttggacctgt 2102405
>emb|BX322651.3| Zebrafish DNA sequence from clone DKEYP-32G10, complete sequence Length = 152913 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 aacaaaattatgcactgaaa 185 |||||||||||||||||||| Sbjct: 71960 aacaaaattatgcactgaaa 71979
>dbj|AK098921.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N21, full insert sequence Length = 3612 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 gattattcaccaaatggctg 255 |||||||||||||||||||| Sbjct: 3415 gattattcaccaaatggctg 3396
>dbj|AK067777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116O03, full insert sequence Length = 3581 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 gattattcaccaaatggctg 255 |||||||||||||||||||| Sbjct: 3461 gattattcaccaaatggctg 3442
>dbj|AK060837.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-C11, full insert sequence Length = 1546 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 gattattcaccaaatggctg 255 |||||||||||||||||||| Sbjct: 1396 gattattcaccaaatggctg 1377
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 tggctgtaatttggacctgt 269 |||||||||||||||||||| Sbjct: 2102375 tggctgtaatttggacctgt 2102356
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21, complete sequence Length = 151936 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 gattattcaccaaatggctg 255 |||||||||||||||||||| Sbjct: 126707 gattattcaccaaatggctg 126688 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,555,379 Number of Sequences: 3902068 Number of extensions: 3555379 Number of successful extensions: 57091 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57005 Number of HSP's gapped (non-prelim): 86 length of query: 362 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 340 effective length of database: 17,147,199,772 effective search space: 5830047922480 effective search space used: 5830047922480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)