Clone Name | rbastl40f01 |
---|---|
Clone Library Name | barley_pub |
>gb|AC010635.6| Homo sapiens chromosome 5 clone CTD-2324F15, complete sequence Length = 81252 Score = 46.1 bits (23), Expect = 0.025 Identities = 29/31 (93%) Strand = Plus / Minus Query: 60 gactttcagatcaacaagcagatgcggggag 90 |||||||||||||||| ||||||| |||||| Sbjct: 72541 gactttcagatcaacaggcagatgaggggag 72511
>ref|NM_125527.1| Arabidopsis thaliana unknown protein AT5G61340 mRNA, complete cds Length = 1114 Score = 44.1 bits (22), Expect = 0.097 Identities = 22/22 (100%) Strand = Plus / Plus Query: 93 atgtaattattacttatacaaa 114 |||||||||||||||||||||| Sbjct: 1072 atgtaattattacttatacaaa 1093
>gb|AY042805.2| Arabidopsis thaliana Unknown protein (MFB13.11) mRNA, complete cds Length = 1114 Score = 44.1 bits (22), Expect = 0.097 Identities = 22/22 (100%) Strand = Plus / Plus Query: 93 atgtaattattacttatacaaa 114 |||||||||||||||||||||| Sbjct: 1072 atgtaattattacttatacaaa 1093
>dbj|AB010073.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFB13 Length = 80376 Score = 44.1 bits (22), Expect = 0.097 Identities = 22/22 (100%) Strand = Plus / Minus Query: 93 atgtaattattacttatacaaa 114 |||||||||||||||||||||| Sbjct: 32604 atgtaattattacttatacaaa 32583
>gb|AC132440.3| Mus musculus BAC clone RP23-239I24 from chromosome 8, complete sequence Length = 183218 Score = 42.1 bits (21), Expect = 0.38 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1 agaaaatgaatccaagagcgaggtt 25 |||||||||||||||||| |||||| Sbjct: 34727 agaaaatgaatccaagagagaggtt 34751
>ref|NM_197888.1| Oryza sativa (japonica cultivar-group) myosin-like protein (OSJNBa0027L23.22), mRNA Length = 2832 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 atgaatccaagagcgaggtt 25 |||||||||||||||||||| Sbjct: 1472 atgaatccaagagcgaggtt 1491
>gb|AC103613.7| Mus musculus chromosome 14, clone RP24-75B12, complete sequence Length = 191158 Score = 40.1 bits (20), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 taattattacttatacaaatgaaa 119 |||||||| ||||||||||||||| Sbjct: 165285 taattatttcttatacaaatgaaa 165308
>gb|AC069292.12| Homo sapiens BAC clone RP11-648L18 from 7, complete sequence Length = 159624 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 agatatgtaattattactta 108 |||||||||||||||||||| Sbjct: 59606 agatatgtaattattactta 59587
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 tattacttatacaaatgaaa 119 |||||||||||||||||||| Sbjct: 2329672 tattacttatacaaatgaaa 2329653
>gb|AC018929.12| Oryza sativa chromosome 10 BAC OSJNBa0027L23 genomic sequence, complete sequence Length = 143961 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 atgaatccaagagcgaggtt 25 |||||||||||||||||||| Sbjct: 124829 atgaatccaagagcgaggtt 124848
>ref|NM_001024867.1| Rattus norvegicus similar to DNA segment, Chr 8, ERATO Doi 531, expressed (MGC116266), mRNA Length = 1743 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 attacttatacaaatgaaat 120 |||||||||||||||||||| Sbjct: 1149 attacttatacaaatgaaat 1168
>gb|BC098069.1| Rattus norvegicus similar to DNA segment, Chr 8, ERATO Doi 531, expressed, mRNA (cDNA clone MGC:116266 IMAGE:7444656), complete cds Length = 1743 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 attacttatacaaatgaaat 120 |||||||||||||||||||| Sbjct: 1149 attacttatacaaatgaaat 1168
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 atgaatccaagagcgaggtt 25 |||||||||||||||||||| Sbjct: 22472406 atgaatccaagagcgaggtt 22472425
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 tattacttatacaaatgaaa 119 |||||||||||||||||||| Sbjct: 34931186 tattacttatacaaatgaaa 34931167
>gb|DQ014508.1| Eucalyptus grandis cellulose synthase 4 (CesA4) mRNA, complete cds Length = 3782 Score = 40.1 bits (20), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 aacaatacattacctgttttggca 50 |||||||||||| ||||||||||| Sbjct: 3702 aacaatacattaactgttttggca 3679
>dbj|AP004120.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1293_E04 Length = 118192 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 tattacttatacaaatgaaa 119 |||||||||||||||||||| Sbjct: 90683 tattacttatacaaatgaaa 90664
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 atgaatccaagagcgaggtt 25 |||||||||||||||||||| Sbjct: 22484874 atgaatccaagagcgaggtt 22484893
>emb|CR450834.5| Zebrafish DNA sequence from clone CH211-237B9 in linkage group 11, complete sequence Length = 137302 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 atatgtaattattacttata 110 |||||||||||||||||||| Sbjct: 55917 atatgtaattattacttata 55936
>gb|AC170600.2| Mus musculus BAC clone RP23-300L16 from chromosome 14, complete sequence Length = 216861 Score = 40.1 bits (20), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 taattattacttatacaaatgaaa 119 |||||||| ||||||||||||||| Sbjct: 115322 taattatttcttatacaaatgaaa 115345
>gb|AC099641.8| Mus musculus chromosome 1, clone RP24-342C13, complete sequence Length = 188523 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 92 tatgtaattattacttata 110 ||||||||||||||||||| Sbjct: 44639 tatgtaattattacttata 44621
>gb|AY366501.1| Homo sapiens clone BAC44d21 BCSC-1 (LOH11CR2A) gene, complete cds; alternatively spliced isoforms Length = 219836 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 91 atatgtaattattacttatacaa 113 ||||||||| ||||||||||||| Sbjct: 175201 atatgtaatgattacttatacaa 175223
>gb|AC153123.10| Medicago truncatula clone mte1-72m7, complete sequence Length = 105895 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 92 tatgtaattattacttata 110 ||||||||||||||||||| Sbjct: 33809 tatgtaattattacttata 33827
>gb|AC135415.27| Medicago truncatula clone mth2-10b9, complete sequence Length = 130045 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 96 taattattacttatacaaatgaa 118 ||||||||||||||| ||||||| Sbjct: 19180 taattattacttatataaatgaa 19158
>emb|AL033392.5|HS403M6 Human DNA sequence from clone RP3-403M6 on chromosome 6q24.1-25.3 Contains part of the AKAP12 gene for A kinase (PRKA) anchor protein (gravin) 12, complete sequence Length = 86329 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 ttacctgttttggcaaagt 54 ||||||||||||||||||| Sbjct: 37707 ttacctgttttggcaaagt 37725
>emb|AL357873.17| Human DNA sequence from clone RP11-344F13 on chromosome 1 Contains a novel gene, complete sequence Length = 143508 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 91 atatgtaattattacttat 109 ||||||||||||||||||| Sbjct: 128923 atatgtaattattacttat 128905
>emb|BX571862.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 4/17 Length = 349519 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 ttacctgttttggcaaagt 54 ||||||||||||||||||| Sbjct: 307727 ttacctgttttggcaaagt 307745
>emb|CR559945.12| Zebrafish DNA sequence from clone CH211-195E19 in linkage group 13, complete sequence Length = 186151 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 93 atgtaattattacttatac 111 ||||||||||||||||||| Sbjct: 147318 atgtaattattacttatac 147300
>gb|AC098965.2| Homo sapiens chromosome 16 clone RP11-419L9, complete sequence Length = 191911 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 3 aaaatgaatccaagagcgaggtt 25 |||||||| |||||||||||||| Sbjct: 144753 aaaatgaagccaagagcgaggtt 144731
>gb|AC008186.5|AC008186 Drosophila melanogaster, chromosome 2R, region 45A-46A, BAC clone BACR10M14, complete sequence Length = 189757 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 97 aattattacttatacaaat 115 ||||||||||||||||||| Sbjct: 116245 aattattacttatacaaat 116227
>gb|AF308810.1|AF308810 Xenopus laevis gravin-like (gl) mRNA, complete cds Length = 8439 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 44 tttggcaaagtcataggactttc 66 |||||||||||||||| |||||| Sbjct: 5261 tttggcaaagtcatagcactttc 5239
>gb|AC154561.2| Mus musculus BAC clone RP23-400M17 from chromosome 17, complete sequence Length = 191047 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 acaatacattacctgtttt 46 ||||||||||||||||||| Sbjct: 115682 acaatacattacctgtttt 115700
>gb|AC007690.12| Homo sapiens 3 BAC RP11-42D20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181531 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 52 agtcataggactttcagat 70 ||||||||||||||||||| Sbjct: 113815 agtcataggactttcagat 113797
>gb|AC012055.9|AC012055 Homo sapiens chromosome 4, clone RP11-248N22, complete sequence Length = 171943 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 25 ttaacaatacattacctgttttg 47 ||||| ||||||||||||||||| Sbjct: 68706 ttaactatacattacctgttttg 68684
>emb|BX284670.11| Zebrafish DNA sequence from clone CH211-264D7 in linkage group 18, complete sequence Length = 159822 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 93 atgtaattattacttatac 111 ||||||||||||||||||| Sbjct: 14491 atgtaattattacttatac 14509
>dbj|AB005231.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBB18 Length = 79537 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 102 ttacttatacaaatgaaat 120 ||||||||||||||||||| Sbjct: 73882 ttacttatacaaatgaaat 73864
>gb|AE003834.3| Drosophila melanogaster chromosome 2R, section 16 of 73 of the complete sequence Length = 243313 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 97 aattattacttatacaaat 115 ||||||||||||||||||| Sbjct: 123087 aattattacttatacaaat 123069
>dbj|AP001884.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-148F13, complete sequence Length = 160492 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 91 atatgtaattattacttatacaa 113 ||||||||| ||||||||||||| Sbjct: 71747 atatgtaatgattacttatacaa 71769
>dbj|AP002407.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-767M8, complete sequence Length = 176292 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 91 atatgtaattattacttatacaa 113 ||||||||| ||||||||||||| Sbjct: 137525 atatgtaatgattacttatacaa 137547
>gb|AC102117.13| Mus musculus chromosome 7, clone RP23-154P9, complete sequence Length = 196717 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 73 acaagcagatgcggggaga 91 ||||||||||||||||||| Sbjct: 10198 acaagcagatgcggggaga 10180
>gb|AC132299.3| Mus musculus BAC clone RP24-336N1 from 1, complete sequence Length = 148456 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 92 tatgtaattattacttata 110 ||||||||||||||||||| Sbjct: 32390 tatgtaattattacttata 32372
>gb|AC102310.11| Mus musculus chromosome 7, clone RP24-426A19, complete sequence Length = 180370 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 acaagcagatgcggggaga 91 ||||||||||||||||||| Sbjct: 8744 acaagcagatgcggggaga 8762
>emb|AL591512.11| Mouse DNA sequence from clone RP23-346D16 on chromosome 2, complete sequence Length = 190549 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 103 tacttatacaaatgaaatg 121 ||||||||||||||||||| Sbjct: 171902 tacttatacaaatgaaatg 171920
>emb|X91270.1|MMSEMCLOT M.musculus DNA coding for semenoclotin Length = 16913 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 103 tacttatacaaatgaaatg 121 ||||||||||||||||||| Sbjct: 5947 tacttatacaaatgaaatg 5929 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,375,972 Number of Sequences: 3902068 Number of extensions: 1375972 Number of successful extensions: 100212 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100036 Number of HSP's gapped (non-prelim): 176 length of query: 128 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 107 effective length of database: 17,151,101,840 effective search space: 1835167896880 effective search space used: 1835167896880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)