ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ADH_THEBR (P14941) NADP-dependent alcohol dehydrogenase (EC 1.1.... 31 0.73
2SYRD_PSESY (P33951) ATP-binding protein syrD 29 3.6
3BGAL_FELCA (O19015) Beta-galactosidase precursor (EC 3.2.1.23) (... 28 6.1
4YL381_MIMIV (Q5UQX2) Hypothetical protein L381 28 6.1
5IL2RA_CANFA (O62802) Interleukin-2 receptor alpha chain precurso... 28 6.1
6ADH_CLOBE (P25984) NADP-dependent alcohol dehydrogenase (EC 1.1.... 28 6.1

>ADH_THEBR (P14941) NADP-dependent alcohol dehydrogenase (EC 1.1.1.2)|
          Length = 352

 Score = 31.2 bits (69), Expect = 0.73
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 173 YFSSGFSLPPSKIQWGSGFFSFTIRGNTC 87
           YF  G  LP  +++WG G    TI+G  C
Sbjct: 267 YFGEGEVLPVPRLEWGCGMAHKTIKGGLC 295



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>SYRD_PSESY (P33951) ATP-binding protein syrD|
          Length = 566

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -2

Query: 167 SSGFSLPPSKIQWGSGFFSFTIRGNTCGTVELTAPKSFC 51
           SSGF+L P  +   SG   + + GN CG  + T  K FC
Sbjct: 358 SSGFALGPIDLTIHSGELVYIVGGNGCG--KSTLAKVFC 394



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>BGAL_FELCA (O19015) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid|
           beta-galactosidase)
          Length = 669

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 33  HCTNYTTKALWSSEFNCPTGVP 98
           H +NYT  A ++  F+ P+G+P
Sbjct: 544 HSSNYTLPAFYAGNFSIPSGIP 565



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>YL381_MIMIV (Q5UQX2) Hypothetical protein L381|
          Length = 280

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
 Frame = +2

Query: 116 KNLNPTGSWKGARRSRKKNN--------MTCSSVVTRYLLSVVSI--HTGTWSWE 250
           +NLNP G W G+    K +N        +T   V+  Y+   +++  H+  ++W+
Sbjct: 213 ENLNPVGVWTGSYNLSKTSNFSLENALYITSQIVIAEYIKEFLAVYKHSENFNWK 267



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>IL2RA_CANFA (O62802) Interleukin-2 receptor alpha chain precursor (IL-2|
           receptor alpha subunit) (IL-2-RA) (IL2-RA) (p55) (TAC
           antigen) (CD25 antigen)
          Length = 268

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 30  VHCTNYTTKALWSSEFNCPTGVPSDCKGEKT*TP 131
           +HCT  ++ A W ++  C +  P + KG+ T  P
Sbjct: 62  MHCTGNSSHASWENKCRCKSVSPENRKGKVTTKP 95



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>ADH_CLOBE (P25984) NADP-dependent alcohol dehydrogenase (EC 1.1.1.2) (CbADH)|
          Length = 351

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 191 LMSRSCYFSSGFSLPPSKIQWGSGFFSFTIRGNTC 87
           ++S   Y  SG +L   +++WG G    TI+G  C
Sbjct: 261 IISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLC 295


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,444,156
Number of Sequences: 219361
Number of extensions: 692047
Number of successful extensions: 1911
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1911
length of database: 80,573,946
effective HSP length: 64
effective length of database: 66,534,842
effective search space used: 1596836208
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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