ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC104286.11| Drosophila melanogaster X BAC RP98-13J2 (Roswell... 44 0.22
2emb|AL050231.2|DMBR37P7 Drosophila melanogaster BAC clone BACR37P7 44 0.22
3gb|AE003417.4| Drosophila melanogaster chromosome X, section 1 o... 44 0.22
4gb|AC091402.2| Sus scrofa clone RP44-363K13, complete sequence 42 0.88
5dbj|AB159447.1| Bombyx mori DNA, chromosome 13, clone:534E24, co... 42 0.88
6gb|BC092015.1| Xenopus laevis cDNA clone MGC:84986 IMAGE:6325168... 42 0.88
7emb|AL845280.4| Mouse DNA sequence from clone RP23-265L1 on chro... 42 0.88
8ref|NM_196975.1| Oryza sativa (japonica cultivar-group) unknown ... 40 3.5
9emb|BX323451.12| Zebrafish DNA sequence from clone DKEY-49H9 in ... 40 3.5
10emb|BX664602.11| Zebrafish DNA sequence from clone DKEY-31C18 in... 40 3.5
11gb|AC154873.6| Mus musculus chromosome 1, clone RP23-71J17, comp... 40 3.5
12gb|AC092319.2| Homo sapiens chromosome 5 clone RP11-103L11, comp... 40 3.5
13emb|BX640535.7| Zebrafish DNA sequence from clone DKEY-85K22 in ... 40 3.5
14gb|AC078948.11| Oryza sativa chromosome 10 BAC OSJNBa0001K12 gen... 40 3.5
15dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.5
16gb|AC069145.5|AC069145 Oryza sativa chromosome 10 BAC OSJNBb0094... 40 3.5
17gb|AC091947.4| Homo sapiens chromosome 5 clone RP11-367F9, compl... 40 3.5
18dbj|AK073558.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.5
19dbj|AK067795.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.5
20emb|BX248506.9| Zebrafish DNA sequence from clone DKEY-70K11 in ... 40 3.5
21gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.5

>gb|AC104286.11| Drosophila melanogaster X BAC RP98-13J2 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 176393

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 35    ctgtacaaattatacaacaaaa 56
             ||||||||||||||||||||||
Sbjct: 76934 ctgtacaaattatacaacaaaa 76955



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>emb|AL050231.2|DMBR37P7 Drosophila melanogaster BAC clone BACR37P7
          Length = 102619

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 35    ctgtacaaattatacaacaaaa 56
             ||||||||||||||||||||||
Sbjct: 71686 ctgtacaaattatacaacaaaa 71707



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>gb|AE003417.4| Drosophila melanogaster chromosome X, section 1 of 74 of the complete
              sequence
          Length = 387740

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 35     ctgtacaaattatacaacaaaa 56
              ||||||||||||||||||||||
Sbjct: 169245 ctgtacaaattatacaacaaaa 169266



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>gb|AC091402.2| Sus scrofa clone RP44-363K13, complete sequence
          Length = 164663

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 113    agaaaaaacctgaaccccact 133
              |||||||||||||||||||||
Sbjct: 117518 agaaaaaacctgaaccccact 117498



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>dbj|AB159447.1| Bombyx mori DNA, chromosome 13, clone:534E24, complete sequence
          Length = 124898

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 40    caaattatacaacaaaagctc 60
             |||||||||||||||||||||
Sbjct: 45456 caaattatacaacaaaagctc 45436



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>gb|BC092015.1| Xenopus laevis cDNA clone MGC:84986 IMAGE:6325168, complete cds
          Length = 1345

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 232 tggaacgtggagctgggaata 252
           |||||||||||||||||||||
Sbjct: 563 tggaacgtggagctgggaata 583



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>emb|AL845280.4| Mouse DNA sequence from clone RP23-265L1 on chromosome X, complete
             sequence
          Length = 142846

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 23    tttaatagttcactgtacaaa 43
             |||||||||||||||||||||
Sbjct: 49896 tttaatagttcactgtacaaa 49916



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>ref|NM_196975.1| Oryza sativa (japonica cultivar-group) unknown protein
            (OSJNBa0001K12.17), mRNA
          Length = 3114

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 123  tgaaccccactggatcttggaagggggcaaggagaagccg 162
            |||||||||||| | |||| |||||| |||||| ||||||
Sbjct: 3012 tgaaccccactgaaacttgtaaggggccaaggaaaagccg 2973



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>emb|BX323451.12| Zebrafish DNA sequence from clone DKEY-49H9 in linkage group 8,
             complete sequence
          Length = 211489

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    acaaattatacaacaaaagc 58
             ||||||||||||||||||||
Sbjct: 65117 acaaattatacaacaaaagc 65136



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>emb|BX664602.11| Zebrafish DNA sequence from clone DKEY-31C18 in linkage group 6, complete
              sequence
          Length = 171498

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 155    agaagccggaagaaaaataa 174
              ||||||||||||||||||||
Sbjct: 158056 agaagccggaagaaaaataa 158037



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>gb|AC154873.6| Mus musculus chromosome 1, clone RP23-71J17, complete sequence
          Length = 256719

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    gatcttggaagggggcaagg 154
              ||||||||||||||||||||
Sbjct: 136323 gatcttggaagggggcaagg 136304



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>gb|AC092319.2| Homo sapiens chromosome 5 clone RP11-103L11, complete sequence
          Length = 132319

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     tttggagcagtgagttcaac 80
              ||||||||||||||||||||
Sbjct: 123009 tttggagcagtgagttcaac 122990



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>emb|BX640535.7| Zebrafish DNA sequence from clone DKEY-85K22 in linkage group 5, complete
              sequence
          Length = 154676

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     gtgagttcaactgtcccaca 89
              ||||||||||||||||||||
Sbjct: 103613 gtgagttcaactgtcccaca 103632



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>gb|AC078948.11| Oryza sativa chromosome 10 BAC OSJNBa0001K12 genomic sequence, complete
              sequence
          Length = 144724

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                  
Query: 28     tagttcactgtacaaattatacaacaaaagctcttt 63
              ||||| ||||||||| ||||||||||| ||||||||
Sbjct: 122583 tagtttactgtacaa-ttatacaacaagagctcttt 122549



 Score = 40.1 bits (20), Expect = 3.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 123    tgaaccccactggatcttggaagggggcaaggagaagccg 162
              |||||||||||| | |||| |||||| |||||| ||||||
Sbjct: 122470 tgaaccccactgaaacttgtaaggggccaaggaaaagccg 122431



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                        
Query: 123      tgaaccccactggatcttggaagggggcaaggagaagccg 162
                |||||||||||| | |||| |||||| |||||| ||||||
Sbjct: 17069866 tgaaccccactgaaacttgtaaggggccaaggaaaagccg 17069905



 Score = 40.1 bits (20), Expect = 3.5
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                    
Query: 28       tagttcactgtacaaattatacaacaaaagctcttt 63
                ||||| ||||||||| ||||||||||| ||||||||
Sbjct: 17069753 tagtttactgtacaa-ttatacaacaagagctcttt 17069787



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>gb|AC069145.5|AC069145 Oryza sativa chromosome 10 BAC OSJNBb0094K03 genomic sequence, complete
              sequence
          Length = 135216

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                      
Query: 123    tgaaccccactggatcttggaagggggcaaggagaagccg 162
              |||||||||||| | |||| |||||| |||||| ||||||
Sbjct: 110358 tgaaccccactgaaacttgtaaggggccaaggaaaagccg 110397



 Score = 40.1 bits (20), Expect = 3.5
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                  
Query: 28     tagttcactgtacaaattatacaacaaaagctcttt 63
              ||||| ||||||||| ||||||||||| ||||||||
Sbjct: 110245 tagtttactgtacaa-ttatacaacaagagctcttt 110279



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>gb|AC091947.4| Homo sapiens chromosome 5 clone RP11-367F9, complete sequence
          Length = 170063

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    tttggagcagtgagttcaac 80
             ||||||||||||||||||||
Sbjct: 12944 tttggagcagtgagttcaac 12925



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>dbj|AK073558.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044N24, full
            insert sequence
          Length = 2884

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                
Query: 28   tagttcactgtacaaattatacaacaaaagctcttt 63
            ||||| ||||||||| ||||||||||| ||||||||
Sbjct: 2847 tagtttactgtacaa-ttatacaacaagagctcttt 2813



 Score = 40.1 bits (20), Expect = 3.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 123  tgaaccccactggatcttggaagggggcaaggagaagccg 162
            |||||||||||| | |||| |||||| |||||| ||||||
Sbjct: 2734 tgaaccccactgaaacttgtaaggggccaaggaaaagccg 2695



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>dbj|AK067795.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118D11, full
            insert sequence
          Length = 3716

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                
Query: 28   tagttcactgtacaaattatacaacaaaagctcttt 63
            ||||| ||||||||| ||||||||||| ||||||||
Sbjct: 3545 tagtttactgtacaa-ttatacaacaagagctcttt 3511



 Score = 40.1 bits (20), Expect = 3.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 123  tgaaccccactggatcttggaagggggcaaggagaagccg 162
            |||||||||||| | |||| |||||| |||||| ||||||
Sbjct: 3432 tgaaccccactgaaacttgtaaggggccaaggaaaagccg 3393



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>emb|BX248506.9| Zebrafish DNA sequence from clone DKEY-70K11 in linkage group 5, complete
              sequence
          Length = 230400

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     gtgagttcaactgtcccaca 89
              ||||||||||||||||||||
Sbjct: 128713 gtgagttcaactgtcccaca 128694



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                        
Query: 123      tgaaccccactggatcttggaagggggcaaggagaagccg 162
                |||||||||||| | |||| |||||| |||||| ||||||
Sbjct: 17078906 tgaaccccactgaaacttgtaaggggccaaggaaaagccg 17078945



 Score = 40.1 bits (20), Expect = 3.5
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                    
Query: 28       tagttcactgtacaaattatacaacaaaagctcttt 63
                ||||| ||||||||| ||||||||||| ||||||||
Sbjct: 17078793 tagtttactgtacaa-ttatacaacaagagctcttt 17078827


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,901,833
Number of Sequences: 3902068
Number of extensions: 2901833
Number of successful extensions: 54385
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54321
Number of HSP's gapped (non-prelim): 64
length of query: 267
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 245
effective length of database: 17,147,199,772
effective search space: 4201063944140
effective search space used: 4201063944140
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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