ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl40e06 |
|---|---|
| Clone Library Name | barley_pub |
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 80.5 bits (197), Expect = 9e-16 Identities = 38/48 (79%), Positives = 40/48 (83%) Frame = -1 Query: 361 DMNKDPALKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNRVSI 218 DMN + ALKNRNGPVKMPYMLLYPNTSD EK GLTAMGIPN +SI Sbjct: 830 DMNGNSALKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 71.2 bits (173), Expect = 6e-13 Identities = 35/47 (74%), Positives = 36/47 (76%) Frame = -1 Query: 358 MNKDPALKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNRVSI 218 MN DP LKNRNGP K PYMLLYPNTSD G A GLTA GIPN +SI Sbjct: 817 MNHDPELKNRNGPAKFPYMLLYPNTSDHKG-AAAGLTAKGIPNSISI 862
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 66.6 bits (161), Expect = 1e-11 Identities = 32/47 (68%), Positives = 35/47 (74%) Frame = -1 Query: 358 MNKDPALKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNRVSI 218 MN D LKNRNGP + PYMLLYPNTSD G A G+TA GIPN +SI Sbjct: 821 MNGDAGLKNRNGPAEFPYMLLYPNTSDVTG-AAAGITAKGIPNSISI 866
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 63.2 bits (152), Expect = 2e-10 Identities = 31/47 (65%), Positives = 34/47 (72%) Frame = -1 Query: 358 MNKDPALKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNRVSI 218 MNKDP KNR GP PY LLYPNTSD G+ A GL+A GIPN +SI Sbjct: 825 MNKDPHRKNRVGPTNFPYTLLYPNTSDLKGD-AAGLSARGIPNSISI 870
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 62.4 bits (150), Expect = 3e-10 Identities = 30/48 (62%), Positives = 35/48 (72%) Frame = -1 Query: 361 DMNKDPALKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNRVSI 218 +MNKDP LKNR GP PY L++PNTSD G A G+TA GIPN +SI Sbjct: 817 NMNKDPLLKNRVGPANFPYTLMFPNTSDNKG-AAEGITARGIPNSISI 863
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 52.0 bits (123), Expect = 4e-07 Identities = 26/46 (56%), Positives = 30/46 (65%) Frame = -1 Query: 355 NKDPALKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNRVSI 218 NKD +L+NRNGPVKMPY +L P D GLT GIPN +SI Sbjct: 823 NKDSSLRNRNGPVKMPYTVLLPTCEDE------GLTFRGIPNSISI 862
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 51.6 bits (122), Expect = 5e-07 Identities = 25/46 (54%), Positives = 31/46 (67%) Frame = -1 Query: 355 NKDPALKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNRVSI 218 N D +L+NR GPVKMPY LLYP++ + GLT GIPN +SI Sbjct: 828 NNDESLRNRYGPVKMPYTLLYPSSEE-------GLTCRGIPNSISI 866
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 51.2 bits (121), Expect = 6e-07 Identities = 25/48 (52%), Positives = 31/48 (64%) Frame = -1 Query: 361 DMNKDPALKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNRVSI 218 + NKD L+NR GP KMPY LLYP++ + GLT GIPN +SI Sbjct: 813 EKNKDETLRNRYGPAKMPYTLLYPSSEE-------GLTFRGIPNSISI 853
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 49.7 bits (117), Expect = 2e-06 Identities = 24/46 (52%), Positives = 31/46 (67%) Frame = -1 Query: 355 NKDPALKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNRVSI 218 N D L+NR+GPV+MPY LLYP++ + GLT GIPN +SI Sbjct: 823 NNDEKLRNRHGPVEMPYTLLYPSSKE-------GLTFRGIPNSISI 861
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 46.6 bits (109), Expect = 1e-05 Identities = 22/46 (47%), Positives = 31/46 (67%) Frame = -1 Query: 355 NKDPALKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNRVSI 218 N DP+L+NR GPV++PY LL+ ++ + GLT GIPN +SI Sbjct: 826 NSDPSLRNRTGPVQLPYTLLHRSSEE-------GLTFKGIPNSISI 864
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 46.6 bits (109), Expect = 1e-05 Identities = 23/46 (50%), Positives = 29/46 (63%) Frame = -1 Query: 355 NKDPALKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNRVSI 218 N D +L NR GPV++PY LL+PN+ GLT GIPN +SI Sbjct: 828 NNDQSLSNRLGPVQLPYTLLHPNSE--------GLTCRGIPNSISI 865
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 45.8 bits (107), Expect = 3e-05 Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Frame = -1 Query: 355 NKDPALK-NRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNRVSI 218 N DP+L+ NR GPV++PY LLYP++ + GLT GIPN +SI Sbjct: 800 NNDPSLQGNRLGPVQLPYTLLYPSSEE-------GLTFRGIPNSISI 839
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 45.8 bits (107), Expect = 3e-05 Identities = 23/47 (48%), Positives = 29/47 (61%) Frame = -1 Query: 358 MNKDPALKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNRVSI 218 MN + KNR+GPV +PY LL+P + + GLT GIPN VSI Sbjct: 820 MNSHKSWKNRSGPVNVPYTLLFPTSEE-------GLTGKGIPNSVSI 859
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 45.8 bits (107), Expect = 3e-05 Identities = 24/48 (50%), Positives = 29/48 (60%) Frame = -1 Query: 361 DMNKDPALKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNRVSI 218 + N D LKNR G VKMPY LL+P++ G+T GIPN VSI Sbjct: 819 ERNDDETLKNRTGLVKMPYTLLFPSSEG-------GVTGRGIPNSVSI 859
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 45.4 bits (106), Expect = 3e-05 Identities = 22/46 (47%), Positives = 31/46 (67%) Frame = -1 Query: 355 NKDPALKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNRVSI 218 N DP+L +R GPV++PY LL+P++ + GLT GIPN +SI Sbjct: 826 NNDPSLYHRVGPVQLPYTLLHPSSKE-------GLTFRGIPNSISI 864
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 45.4 bits (106), Expect = 3e-05 Identities = 23/48 (47%), Positives = 30/48 (62%) Frame = -1 Query: 361 DMNKDPALKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNRVSI 218 + N D L+NR GPV+MPY LL P++ + GLT GIPN +SI Sbjct: 817 ERNNDEKLRNRCGPVQMPYTLLLPSSKE-------GLTFRGIPNSISI 857
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 42.7 bits (99), Expect = 2e-04 Identities = 23/46 (50%), Positives = 26/46 (56%) Frame = -1 Query: 355 NKDPALKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNRVSI 218 N D L NR+GPV PY LL+P + GLT GIPN VSI Sbjct: 823 NGDNILTNRSGPVNAPYTLLFPTSEG-------GLTGKGIPNSVSI 861
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 40.8 bits (94), Expect = 8e-04 Identities = 20/40 (50%), Positives = 24/40 (60%) Frame = -1 Query: 355 NKDPALKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGI 236 N D L+NR GP KMPY LLYP++ + GLT GI Sbjct: 709 NNDETLRNRTGPAKMPYTLLYPSSEE-------GLTFRGI 741
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 40.4 bits (93), Expect = 0.001 Identities = 22/46 (47%), Positives = 25/46 (54%) Frame = -1 Query: 355 NKDPALKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNRVSI 218 N + L NR GPV PY LL+P + GLT GIPN VSI Sbjct: 822 NGNNILTNRTGPVNAPYTLLFPTSEG-------GLTGKGIPNSVSI 860
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 38.1 bits (87), Expect = 0.005 Identities = 24/46 (52%), Positives = 27/46 (58%) Frame = -1 Query: 355 NKDPALKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNRVSI 218 NKD LKNR G +PY L+ P SDA G+T MGIPN SI Sbjct: 903 NKDRKLKNRCGAGILPYQLMKP-FSDA------GVTGMGIPNSTSI 941
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 37.0 bits (84), Expect = 0.012 Identities = 21/46 (45%), Positives = 25/46 (54%) Frame = -1 Query: 355 NKDPALKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNRVSI 218 NKD LKNR G +PY L+ P + G+T MGIPN SI Sbjct: 886 NKDRKLKNRCGAGILPYQLMKPFSDS-------GVTGMGIPNSTSI 924
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 37.0 bits (84), Expect = 0.012 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Frame = -1 Query: 361 DMNKDPALKNRNGPVKMPYMLLYP---NTSDANGEKALGLTAMGIPNRVSI 218 + N DP KNR+G +PY+LL P + +D + + MGIPN +SI Sbjct: 886 EWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 36.6 bits (83), Expect = 0.016 Identities = 20/48 (41%), Positives = 29/48 (60%) Frame = -1 Query: 361 DMNKDPALKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNRVSI 218 + NKD + +NR+G +PY+LL P + N A + MGIPN +SI Sbjct: 887 EWNKDDSRRNRHGAGVVPYVLLRP--LNGNPMDAKTVMEMGIPNSISI 932
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 34.3 bits (77), Expect = 0.077 Identities = 17/46 (36%), Positives = 26/46 (56%) Frame = -1 Query: 355 NKDPALKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNRVSI 218 N DP+ +NR G +PY L+ P++ G+T G+PN V+I Sbjct: 861 NADPSRRNRCGAGVLPYELMAPSSGP-------GITCRGVPNSVTI 899
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 32.3 bits (72), Expect = 0.29 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = -1 Query: 355 NKDPALKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNRVSI 218 N D KNR G +PY LL P++ G+T G+PN +SI Sbjct: 880 NADHGRKNRCGAGVLPYELLAPSSPP-------GVTCRGVPNSISI 918
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 32.0 bits (71), Expect = 0.38 Identities = 19/46 (41%), Positives = 24/46 (52%) Frame = -1 Query: 355 NKDPALKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNRVSI 218 N +P KNR G +PY LL P + G+T GIPN +SI Sbjct: 858 NNNPENKNRCGAGIVPYELLKPFSEP-------GVTGRGIPNSISI 896
>GATA6_HUMAN (Q92908) Transcription factor GATA-6 (GATA-binding factor 6)| Length = 449 Score = 30.0 bits (66), Expect = 1.5 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Frame = +2 Query: 23 LSPPYQHHLRHNHHFPSSTNPW---QLITATTQKPMKSNTIH 139 L+ Y HH H+HH PS +P+ L A P ++ +H Sbjct: 173 LNGTYHHHHHHHHHHPSPYSPYVGAPLTPAWPAGPFETPVLH 214
>YF1M_CAEEL (Q21874) Hypothetical protein R09E10.5 precursor| Length = 1459 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +3 Query: 240 PMAVSPSAFSPLASDVLGYSSM*GIFT 320 PM + P FSP+ SDV G M G+ T Sbjct: 1431 PMTLEPRGFSPVPSDVRGSQGMLGLNT 1457
>C18AA_PAEPP (Q45358) Parasporal crystal protein cry18Aa (Parasporal| delta-endotoxin CryXVIIIA(a)) (Crystaline parasporal protoxin) (79 kDa crystal protein) Length = 706 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +2 Query: 116 PMKSNTIHLARHEPIHDQRTDDYRKKETKTM 208 P+ +NTI PI+ RTD +RKK T+ + Sbjct: 74 PIDNNTICSTDFTPINVMRTDPFRKKSTQEL 104
>ATF2_MOUSE (P16951) Cyclic AMP-dependent transcription factor ATF-2| (Activating transcription factor 2) (cAMP response element-binding protein CRE-BP1) (MXBP protein) Length = 487 Score = 28.9 bits (63), Expect = 3.2 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 10/99 (10%) Frame = +3 Query: 27 PHPINIIYDTIIIFHHPLIPGN*LPQPPRSQ*KV------TQY----TLRDTNRSMTSGR 176 P + ++ ++ P IPG PQP +S+ K+ TQ T DT + SG Sbjct: 225 PAAVPLVRPVTMVPSVPGIPGPSSPQPVQSEAKMRLKAALTQQHPPVTNGDTVKGHGSGL 284 Query: 177 TTTERRKQRPCSAQMETLLGMPMAVSPSAFSPLASDVLG 293 T+ + RP S Q SP+ +P + G Sbjct: 285 VRTQSEESRPQSLQQPATSTTETPASPAHTTPQTQNTSG 323
>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)| Length = 896 Score = 28.5 bits (62), Expect = 4.2 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = -1 Query: 361 DMNKDPALKNRNGPVKMPYMLLYPNTSDANGEKALGLTAMGIPNRVSI 218 + N + LKNR G + Y LL P + G+T MG+P +SI Sbjct: 856 ERNVNITLKNRAGAGVVKYELLKPTSEH-------GVTGMGVPYSISI 896
>ATF2_HUMAN (P15336) Cyclic AMP-dependent transcription factor ATF-2| (Activating transcription factor 2) (cAMP response element-binding protein CRE-BP1) (HB16) Length = 487 Score = 28.5 bits (62), Expect = 4.2 Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 10/99 (10%) Frame = +3 Query: 27 PHPINIIYDTIIIFHHPLIPGN*LPQPPRSQ*KV------TQY----TLRDTNRSMTSGR 176 P + ++ ++ P IPG PQP +S+ K+ TQ T DT + SG Sbjct: 225 PAAVPLVRPVTMVPSVPGIPGPSSPQPVQSEAKMRLKAALTQQHPPVTNGDTVKGHGSGL 284 Query: 177 TTTERRKQRPCSAQMETLLGMPMAVSPSAFSPLASDVLG 293 T+ + RP S Q SP+ +P G Sbjct: 285 VRTQSEESRPQSLQQPATSTTETPASPAHTTPQTQSTSG 323
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 23.9 bits (50), Expect(2) = 5.0 Identities = 9/23 (39%), Positives = 12/23 (52%) Frame = +2 Query: 41 HHLRHNHHFPSSTNPWQLITATT 109 HH +H+HH P + T TT Sbjct: 23 HHQQHHHHPPPPPSRTHFTTITT 45 Score = 22.7 bits (47), Expect(2) = 5.0 Identities = 12/42 (28%), Positives = 17/42 (40%) Frame = +1 Query: 82 SLATNYRNHPEANEK*HNTPCETRTDP*PADGRLPKEGNKDH 207 SL ++ HP + H+ P R P D P +DH Sbjct: 64 SLFLSFPPHPPRPPQDHHRPTPARDHRDPRDHLPPTRTRRDH 105
>MECP2_MOUSE (Q9Z2D6) Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2)| Length = 484 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = +2 Query: 26 SPPYQHHLRHNHHFPSSTNPWQLITATTQKPMKSNTIHLARHEP 157 SPP + H H+HH S+ P L+ + +S+ ++ EP Sbjct: 360 SPPKKEHHHHHHHSESTKAPMPLLPSPPPPEPESSEDPISPPEP 403
>DDLA_SHIFL (P0A6K0) D-alanine--D-alanine ligase A (EC 6.3.2.4)| (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A) Length = 364 Score = 28.1 bits (61), Expect = 5.5 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +3 Query: 126 VTQYTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPMAVSPS 260 VT+ LRD ++ T T + A++E+ LG+P+ V P+ Sbjct: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187
>DDLA_ECOLI (P0A6J8) D-alanine--D-alanine ligase A (EC 6.3.2.4)| (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A) Length = 364 Score = 28.1 bits (61), Expect = 5.5 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +3 Query: 126 VTQYTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPMAVSPS 260 VT+ LRD ++ T T + A++E+ LG+P+ V P+ Sbjct: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187
>DDLA_ECOL6 (Q8FKE3) D-alanine--D-alanine ligase A (EC 6.3.2.4)| (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A) Length = 364 Score = 28.1 bits (61), Expect = 5.5 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +3 Query: 126 VTQYTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPMAVSPS 260 VT+ LRD ++ T T + A++E+ LG+P+ V P+ Sbjct: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187
>DDLA_ECO57 (P0A6J9) D-alanine--D-alanine ligase A (EC 6.3.2.4)| (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A) Length = 364 Score = 28.1 bits (61), Expect = 5.5 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +3 Query: 126 VTQYTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPMAVSPS 260 VT+ LRD ++ T T + A++E+ LG+P+ V P+ Sbjct: 143 VTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPA 187
>YO25_CAEEL (P34675) Hypothetical protein ZK688.5| Length = 1620 Score = 27.7 bits (60), Expect = 7.2 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%) Frame = +3 Query: 75 PLIPGN*LPQPPRSQ*KVTQYTLRDTNRSMTSGRTTTERRKQRPCS--AQMETLLGMPMA 248 P +P LP P Q + TS R TT R +P + A+ ETL P+A Sbjct: 628 PSVPVETLPPPGSDQ------------QPGTSRRFTTHRFNVQPDARGAETETLAPFPVA 675 Query: 249 VSPSAFSPLASDV 287 + P+ +A ++ Sbjct: 676 IEPNELQRIAKNI 688
>CTND2_MOUSE (O35927) Catenin delta-2 (Neural plakophilin-related ARM-repeat| protein) (NPRAP) (Neurojungin) Length = 1247 Score = 27.7 bits (60), Expect = 7.2 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 11/92 (11%) Frame = +2 Query: 8 LIHA*LSPPYQHHLRHNHHFPSSTNPWQLITATTQKPMKSNTIHLARH-----------E 154 L+HA S Y H + + + P L A ++ S HLA + Sbjct: 362 LVHA--SEQYSKHSQELYATATLQRPGSL-AAGSRASYSSQHGHLAPELRALQSPEHHID 418 Query: 155 PIHDQRTDDYRKKETKTMLSSNGDPVGDAHGG 250 PI++ R Y+K +++ S GDP+ AH G Sbjct: 419 PIYEDRV--YQKPPMRSLSQSQGDPLPPAHTG 448
>VGLM_EBV (P03215) Glycoprotein M| Length = 405 Score = 27.7 bits (60), Expect = 7.2 Identities = 17/50 (34%), Positives = 23/50 (46%) Frame = +3 Query: 96 LPQPPRSQ*KVTQYTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPM 245 L PR + T R+ RS TS ++ R+QRP S Q +PM Sbjct: 346 LESEPRPRPSRTPSPGRNRRRSSTSSSSSRSTRRQRPVSTQALVSSVLPM 395
>HIPK4_RAT (Q4V793) Homeodomain-interacting protein kinase 4 (EC 2.7.11.1)| Length = 616 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 6/28 (21%) Frame = +2 Query: 29 PPYQHHLRHNHHF------PSSTNPWQL 94 P H R HHF P +TNPWQL Sbjct: 236 PHLLHAARKAHHFFKRNPHPDATNPWQL 263
>GDS1_YEAST (P41913) Protein GDS1| Length = 522 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/53 (30%), Positives = 24/53 (45%) Frame = +3 Query: 123 KVTQYTLRDTNRSMTSGRTTTERRKQRPCSAQMETLLGMPMAVSPSAFSPLAS 281 K Y DTN SMT + T + + +Q ++L P S ++ S AS Sbjct: 325 KKRNYMDEDTNESMTEPKKTKTTKPGKQTKSQSLSVLSTPKKGSSASLSTFAS 377
>HXA1_MOUSE (P09022) Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein| ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein ERA-1-399) Length = 331 Score = 27.3 bits (59), Expect = 9.4 Identities = 8/18 (44%), Positives = 12/18 (66%) Frame = +2 Query: 23 LSPPYQHHLRHNHHFPSS 76 +S P+ HH H+HH P + Sbjct: 56 ISSPHHHHHHHHHHHPQT 73
>CTND2_HUMAN (Q9UQB3) Catenin delta-2 (Delta-catenin) (Neural| plakophilin-related ARM-repeat protein) (NPRAP) (Neurojungin) (GT24) Length = 1225 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +2 Query: 152 EPIHDQRTDDYRKKETKTMLSSNGDPVGDAHGG 250 +PI++ R Y+K +++ S GDP+ AH G Sbjct: 421 DPIYEDRV--YQKPPMRSLSQSQGDPLPPAHTG 451
>GLTL2_MOUSE (Q9D2N8) Polypeptide N-acetylgalactosaminyltransferase-like protein| 2 (EC 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase-like protein 2) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase-like protein 2) (Polypeptide GalNAc tra Length = 638 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = -1 Query: 196 FLLSVVVRPLVMDRF-VSRKVYCVTFHWLL 110 F LS V +P +R + R++ C TFHW L Sbjct: 459 FTLSKVAKPDCTERLKLQRRLGCRTFHWFL 488
>STP2_CANFA (O77645) Nuclear transition protein 2 (TP-2) (TP2)| Length = 129 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = +2 Query: 14 HA*LSPPYQHHLRHNHHFP 70 H L P +Q H RH+HH P Sbjct: 67 HPTLPPRHQKHTRHSHHCP 85 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,429,208 Number of Sequences: 219361 Number of extensions: 952461 Number of successful extensions: 2819 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 2611 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2764 length of database: 80,573,946 effective HSP length: 95 effective length of database: 59,734,651 effective search space used: 1433631624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
