ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RL15_FRATT (Q5NHU9) 50S ribosomal protein L15 30 1.8
2RL15_BUCBP (Q89A84) 50S ribosomal protein L15 29 2.3
3ENP2_HUMAN (Q9Y5L3) Ectonucleoside triphosphate diphosphohydrola... 29 3.0
4RL15_DECAR (Q47J84) 50S ribosomal protein L15 28 6.8
5RL15_BURPS (Q63Q30) 50S ribosomal protein L15 28 6.8
6RL15_BURMA (Q62GM4) 50S ribosomal protein L15 28 6.8
7Y1276_MYCTU (Q11043) Hypothetical protein Rv1276c/MT1313 28 6.8
8RL15_BORPE (Q7VTB2) 50S ribosomal protein L15 28 6.8
9RL15_BORPA (Q7W2D6) 50S ribosomal protein L15 28 6.8
10RL15_BORBR (Q7WRA4) 50S ribosomal protein L15 28 6.8
11RL15_METCA (Q605D1) 50S ribosomal protein L15 27 8.9
12CARB_CLOAB (Q97FT3) Carbamoyl-phosphate synthase large chain (EC... 27 8.9
13BPHF_BURCE (P37332) Biphenyl dioxygenase system ferredoxin subunit 27 8.9

>RL15_FRATT (Q5NHU9) 50S ribosomal protein L15|
          Length = 143

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 291 GFSSTLGKGHEKTGMAARSGC*HQ*SLAEGSVPLELGVP 407
           G   T GKGH+  G  ARSG  H+     G +PL+  +P
Sbjct: 26  GLGKTSGKGHK--GQKARSGGYHKVGFEGGQMPLQRRLP 62



to top

>RL15_BUCBP (Q89A84) 50S ribosomal protein L15|
          Length = 147

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 291 GFSSTLGKGHEKTGMAARSGC*HQ*SLAEGSVPLELGVP 407
           GF  T G+GH+  G  +RSGC  +     G +PL   +P
Sbjct: 26  GFGKTSGRGHK--GQKSRSGCKIRRGFEGGQMPLYRRIP 62



to top

>ENP2_HUMAN (Q9Y5L3) Ectonucleoside triphosphate diphosphohydrolase 2 (EC|
           3.6.1.-) (NTPDase2) (Ecto-ATPase) (CD39 antigen-like 1)
          Length = 495

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -3

Query: 284 LLGKNYITPCKLQV---DCHAATLTRLSGVNLDHVC*QK*SGLWSFPRMYC*TCLFPCLF 114
           LLG  Y +PC +     + +++    LSG +  H+C    SGL+SF       C F  +F
Sbjct: 275 LLGDVYQSPCTMAQRPQNFNSSARVSLSGSSDPHLCRDLVSGLFSFSSCPFSRCSFNGVF 334

Query: 113 YP 108
            P
Sbjct: 335 QP 336



to top

>RL15_DECAR (Q47J84) 50S ribosomal protein L15|
          Length = 144

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 291 GFSSTLGKGHEKTGMAARSGC*HQ*SLAEGSVPLELGVP 407
           G   T G+GH+  G  +RSG  H+     G +PL+  +P
Sbjct: 26  GLGKTCGRGHK--GQKSRSGGFHKVGFEGGQMPLQRRLP 62



to top

>RL15_BURPS (Q63Q30) 50S ribosomal protein L15|
          Length = 144

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 291 GFSSTLGKGHEKTGMAARSGC*HQ*SLAEGSVPLELGVP 407
           G   T G+GH+  G  +RSG  H+     G +PL+  +P
Sbjct: 26  GLGKTAGRGHK--GQKSRSGGFHKVGFEGGQMPLQRRLP 62



to top

>RL15_BURMA (Q62GM4) 50S ribosomal protein L15|
          Length = 144

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 291 GFSSTLGKGHEKTGMAARSGC*HQ*SLAEGSVPLELGVP 407
           G   T G+GH+  G  +RSG  H+     G +PL+  +P
Sbjct: 26  GLGKTAGRGHK--GQKSRSGGFHKVGFEGGQMPLQRRLP 62



to top

>Y1276_MYCTU (Q11043) Hypothetical protein Rv1276c/MT1313|
          Length = 158

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 227 WQHGNRPGVCTVLCSSSPEASRV*FHTG 310
           W   N P V  VLCS++  A +   HTG
Sbjct: 33  WLRANLPAVDAVLCSTATRARQTLAHTG 60



to top

>RL15_BORPE (Q7VTB2) 50S ribosomal protein L15|
          Length = 146

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 291 GFSSTLGKGHEKTGMAARSGC*HQ*SLAEGSVPLELGVP 407
           G   T G+GH+  G  +RSG  H+     G +PL+  +P
Sbjct: 29  GLGKTAGRGHK--GQKSRSGGFHKVGFEGGQMPLQRRLP 65



to top

>RL15_BORPA (Q7W2D6) 50S ribosomal protein L15|
          Length = 146

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 291 GFSSTLGKGHEKTGMAARSGC*HQ*SLAEGSVPLELGVP 407
           G   T G+GH+  G  +RSG  H+     G +PL+  +P
Sbjct: 29  GLGKTAGRGHK--GQKSRSGGFHKVGFEGGQMPLQRRLP 65



to top

>RL15_BORBR (Q7WRA4) 50S ribosomal protein L15|
          Length = 146

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 291 GFSSTLGKGHEKTGMAARSGC*HQ*SLAEGSVPLELGVP 407
           G   T G+GH+  G  +RSG  H+     G +PL+  +P
Sbjct: 29  GLGKTAGRGHK--GQKSRSGGFHKVGFEGGQMPLQRRLP 65



to top

>RL15_METCA (Q605D1) 50S ribosomal protein L15|
          Length = 144

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 291 GFSSTLGK--GHEKTGMAARSGC*HQ*SLAEGSVPLELGVP 407
           G  STLGK  G    G  AR+G  H+     G +PL+  +P
Sbjct: 22  GIGSTLGKTCGRGHKGQKARAGGFHKVGFEGGQMPLQRRLP 62



to top

>CARB_CLOAB (Q97FT3) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1065

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 56  CTHGTWMVEEAGY 18
           C HG W ++EAGY
Sbjct: 576 CVHGVWAIKEAGY 588



to top

>BPHF_BURCE (P37332) Biphenyl dioxygenase system ferredoxin subunit|
          Length = 109

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 80  ELQVLCSHCTHGTWMVEEAGYMQ 12
           EL      CTHG W + + GY++
Sbjct: 35  ELFATQDRCTHGDWSLSDGGYLE 57


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,252,073
Number of Sequences: 219361
Number of extensions: 1159427
Number of successful extensions: 2486
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2486
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top