ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KLDC4_HUMAN (Q8TBB5) Kelch domain-containing protein 4 29 5.3
2CERK1_HUMAN (Q8TCT0) Ceramide kinase (EC 2.7.1.138) (Acylsphingo... 28 9.0

>KLDC4_HUMAN (Q8TBB5) Kelch domain-containing protein 4|
          Length = 520

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 400 PEAPPLELCGFVVSRTPRSAQLIQEMQKEGALLFVVQQVITEPGS 266
           PE      CG   ++ P   QL++E+  E   +  ++QV+T PGS
Sbjct: 365 PEGGSRPACGGAGTQGP--VQLVKEVVAEDGTVVTIKQVLTAPGS 407



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>CERK1_HUMAN (Q8TCT0) Ceramide kinase (EC 2.7.1.138) (Acylsphingosine kinase)|
           (hCERK) (Lipid kinase 4) (LK4)
          Length = 537

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 14/72 (19%)
 Frame = +3

Query: 69  MMGTSTETDIEGAGHNELAMKQ--------------KSSQVNRWSFYPKNDHCGLKEKQL 206
           ++G S   D+    HN   ++               K S+  RW    + D  GLK    
Sbjct: 262 VVGDSLAMDVSSVHHNSTLLRYSVSLLGYGFYGDIIKDSEKKRWLGLARYDFSGLKTFLS 321

Query: 207 QVCSSGTTALLP 242
             C  GT + LP
Sbjct: 322 HHCYEGTVSFLP 333


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,081,975
Number of Sequences: 219361
Number of extensions: 1195515
Number of successful extensions: 3662
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3660
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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