>RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1 (EC 3.6.1.-)|
           (Helicase-like protein NHL)
          Length = 1400

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -2

Query: 174 HLEAFLCRLIRSSYNCHLYL*VE----WPQLMSPVL*LADTCK 58
           HL+  LCR   +S +CH Y  VE      +L SP+L + D  K
Sbjct: 157 HLQIHLCRKKVASRSCHFYNNVEEKSLEQELASPILDIEDLVK 199

>PEPA4_RABIT (P28713) Pepsin II-4 precursor (EC 3.4.23.1) (Pepsin A)|
          Length = 387

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
 Frame = +2

Query: 65  VSASYRTGLINCGHSTYKYKWQL*DDRINLQRNASRC*KSFQYV-------LYIARSSLR 223
           + +SY TG +N    +Y+  WQ+  D +++      C  S Q +       L    S++ 
Sbjct: 231 IDSSYYTGSLNWVPVSYEGYWQITMDSVSINGETIACADSCQAIVDTGTSLLTGPTSAIS 290

Query: 224 NGQSNRSQSPNLKRQTVSMFSA 289
           N QS    S NL  + V   SA
Sbjct: 291 NIQSYIGASKNLLGENVISCSA 312

>PEPA2_RABIT (P27821) Pepsin II-2/3 precursor (EC 3.4.23.1) (Pepsin A)|
          Length = 387

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
 Frame = +2

Query: 65  VSASYRTGLINCGHSTYKYKWQL*DDRINLQRNASRC*KSFQYV-------LYIARSSLR 223
           + +SY TG +N    +Y+  WQ+  D +++      C  S Q +       L    S++ 
Sbjct: 231 IDSSYYTGSLNWVPVSYEGYWQITMDSVSINGETIACADSCQAIVDTGTSLLTGPTSAIS 290

Query: 224 NGQSNRSQSPNLKRQTVSMFSA 289
           N QS    S NL  + V   SA
Sbjct: 291 NIQSYIGASKNLLGENVISCSA 312

>NHR41_CAEEL (Q9N4B8) Nuclear hormone receptor family member nhr-41|
          Length = 615

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 8   NIMLICRETNNRKTTTHLHVSASYRTGLINCGHST 112
           N  ++C   NN++ TT  H+S +    L+   H T
Sbjct: 231 NSSMLCNNDNNQQNTTPEHLSPNLLLSLVKLEHET 265


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,142,968
Number of Sequences: 219361
Number of extensions: 838957
Number of successful extensions: 2080
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2080
length of database: 80,573,946
effective HSP length: 75
effective length of database: 64,121,871
effective search space used: 1538924904
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)