>gb|AY112097.1| Zea mays CL313_-3 mRNA sequence
          Length = 603

 Score = 46.1 bits (23), Expect = 0.074
 Identities = 51/58 (87%), Gaps = 3/58 (5%)
 Strand = Plus / Minus

                                                                     
Query: 187 ccagctggtcgcttttgaacaattcatggagatacagagcagagcaccaatcctaatc 244
           |||||||| |||||| ||||| ||||||||||  |  |||||||||||||||||||||
Sbjct: 442 ccagctggccgcttt-gaacagttcatggaga--cgtagcagagcaccaatcctaatc 388

>gb|BC073483.1| Xenopus laevis cDNA clone IMAGE:5570009, partial cds
          Length = 5458

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 133  aatcttctgcaccttactccc 153
            |||||||||||||||||||||
Sbjct: 5287 aatcttctgcaccttactccc 5307

>emb|Z66512.1|CEF52H3 Caenorhabditis elegans Cosmid F52H3, complete sequence
          Length = 42632

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 61    aaggatacaacatcttctctt 81
             |||||||||||||||||||||
Sbjct: 37619 aaggatacaacatcttctctt 37639

>gb|AC152977.1| Mus musculus 10 BAC RP23-251I19 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 192515

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 247   aaatcacaatgctagaaatgg 267
             |||||||||||||||||||||
Sbjct: 21906 aaatcacaatgctagaaatgg 21886

>gb|AC132867.6| Mus musculus chromosome 1, clone RP24-388I23, complete sequence
          Length = 209151

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 37     ttaaaaacaagtattttcaaa 57
              |||||||||||||||||||||
Sbjct: 196127 ttaaaaacaagtattttcaaa 196107

>gb|AY109431.1| Zea mays CL313_1 mRNA sequence
          Length = 2617

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 45/52 (86%), Gaps = 2/52 (3%)
 Strand = Plus / Minus

                                                               
Query: 200 tttgaacaattcatggagatacagagcagagcaccaatcctaatctgaaatc 251
           |||||||||||||||||||| |  ||||||  || |||||||||||| ||||
Sbjct: 855 tttgaacaattcatggagatgc--agcagactacaaatcctaatctggaatc 806

>gb|AC118643.6| Mus musculus chromosome 1, clone RP24-113H21, complete sequence
          Length = 184206

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 37     ttaaaaacaagtattttcaaa 57
              |||||||||||||||||||||
Sbjct: 154018 ttaaaaacaagtattttcaaa 154038

>ref|NM_111012.2| Arabidopsis thaliana MBD9; DNA binding AT3G01460 (MBD9) mRNA,
           complete cds
          Length = 7457

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 75  ttctcttcttcaagaaagat 94
           ||||||||||||||||||||
Sbjct: 978 ttctcttcttcaagaaagat 997

>gb|AC119980.7| Mus musculus chromosome 8, clone RP24-495J19, complete sequence
          Length = 145150

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   gaaatcacaatgctagaaat 265
             ||||||||||||||||||||
Sbjct: 38616 gaaatcacaatgctagaaat 38597

>gb|AC101844.7| Mus musculus chromosome 7, clone RP23-257M22, complete sequence
          Length = 197827

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    aacatcttctcttcttcaag 88
             ||||||||||||||||||||
Sbjct: 73997 aacatcttctcttcttcaag 74016

>gb|AC132104.3| Mus musculus BAC clone RP24-364N7 from chromosome 9, complete sequence
          Length = 161545

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    ctcccccctacactccattc 168
              ||||||||||||||||||||
Sbjct: 111178 ctcccccctacactccattc 111159

>gb|AC010870.6|ATAC010870 Arabidopsis thaliana chromosome III BAC T13O15 genomic sequence,
             complete sequence
          Length = 86324

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    ttctcttcttcaagaaagat 94
             ||||||||||||||||||||
Sbjct: 77558 ttctcttcttcaagaaagat 77577

>emb|AL390857.7| Human DNA sequence from clone RP11-51N22 on chromosome 13 Contains a
              heterogeneous nuclear ribonucleoprotein A1 (HNRPA1)
              pseudogene and a novel pseudogene (KIAA1935 FLJ31359),
              complete sequence
          Length = 154273

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 210    tcatggagatacagagcaga 229
              ||||||||||||||||||||
Sbjct: 109956 tcatggagatacagagcaga 109937

>ref|NM_001017032.2| Xenopus tropicalis leucine zipper transcription factor-like 1
           (lztfl1), mRNA
          Length = 1230

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  gaaggcacgattaaaaacaa 46
           ||||||||||||||||||||
Sbjct: 564 gaaggcacgattaaaaacaa 583

>emb|AL096860.1|ATT21L8 Arabidopsis thaliana DNA chromosome 3, BAC clone T21L8
          Length = 87224

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 235   aatcctaatctgaaatcacaatgc 258
             ||||||||||| ||||||||||||
Sbjct: 29377 aatcctaatctaaaatcacaatgc 29354

>emb|BX005370.13| Zebrafish DNA sequence from clone DKEY-21P9 in linkage group 10, complete
              sequence
          Length = 208765

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 213    tggagatacagagcagagca 232
              ||||||||||||||||||||
Sbjct: 188996 tggagatacagagcagagca 189015

>gb|AC094099.3| Homo sapiens chromosome 5 clone RP11-153B10, complete sequence
          Length = 68440

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 210   tcatggagatacagagcaga 229
             ||||||||||||||||||||
Sbjct: 46198 tcatggagatacagagcaga 46217

>gb|AC103706.2| Homo sapiens chromosome 8, clone RP11-629O1, complete sequence
          Length = 189207

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 311   gtagtactttacagttgaac 330
             ||||||||||||||||||||
Sbjct: 32416 gtagtactttacagttgaac 32397

>gb|AF212832.5| Homo sapiens chromosome 8 clone CTC-806C5 map 8q24.3, complete sequence
          Length = 122029

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 311    gtagtactttacagttgaac 330
              ||||||||||||||||||||
Sbjct: 102536 gtagtactttacagttgaac 102555

>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 128    aaaataatcttctgcacctt 147
              ||||||||||||||||||||
Sbjct: 838347 aaaataatcttctgcacctt 838366

>emb|CR762013.2| Xenopus tropicalis finished cDNA, clone TEgg003i20
          Length = 1230

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  gaaggcacgattaaaaacaa 46
           ||||||||||||||||||||
Sbjct: 564 gaaggcacgattaaaaacaa 583

>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome
          Length = 1767403

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     aaaacaagtattttcaaaag 59
              ||||||||||||||||||||
Sbjct: 799768 aaaacaagtattttcaaaag 799749

>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome
          Length = 2843201

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 48     tattttcaaaaggaaggata 67
              ||||||||||||||||||||
Sbjct: 549093 tattttcaaaaggaaggata 549112


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,880,594
Number of Sequences: 3902068
Number of extensions: 3880594
Number of successful extensions: 99888
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99794
Number of HSP's gapped (non-prelim): 94
length of query: 345
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 323
effective length of database: 17,147,199,772
effective search space: 5538545526356
effective search space used: 5538545526356
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)