Clone Name | rbastl40d04 |
---|---|
Clone Library Name | barley_pub |
>gb|AY111343.1| Zea mays CL40259_1 mRNA sequence Length = 804 Score = 129 bits (65), Expect = 8e-27 Identities = 88/96 (91%) Strand = Plus / Minus Query: 319 gcgtcaatcaccgattgcggtggatccaggtccttgtcctggagagcgttgcccagcagc 378 ||||||||||| || |||||||||||||||||||||||||| |||||| ||||||||||| Sbjct: 510 gcgtcaatcactgactgcggtggatccaggtccttgtcctgcagagcgctgcccagcagc 451 Query: 379 ttttgcatctctgatgcanagacatcatccaggatc 414 ||||||||||| |||||| ||||||| || |||||| Sbjct: 450 ttttgcatctccgatgcaaagacatcgtcaaggatc 415
>ref|XM_464489.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3009 Score = 87.7 bits (44), Expect = 3e-14 Identities = 97/115 (84%) Strand = Plus / Minus Query: 300 tcaacaaaggatagaacgagcgtcaatcaccgattgcggtggatccaggtccttgtcctg 359 |||||| |||||||| || || || | |||||| ||||||||||| |||||| ||||||| Sbjct: 3009 tcaacagaggatagatcgggcatcgaccaccgactgcggtggatcgaggtccctgtcctg 2950 Query: 360 gagagcgttgcccagcagcttttgcatctctgatgcanagacatcatccaggatc 414 || | |||||| || |||||||||| ||||||||| ||||||| ||||||||| Sbjct: 2949 cagggagttgcctagatgcttttgcatttctgatgcaaagacatcgtccaggatc 2895
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 87.7 bits (44), Expect = 3e-14 Identities = 97/115 (84%) Strand = Plus / Plus Query: 300 tcaacaaaggatagaacgagcgtcaatcaccgattgcggtggatccaggtccttgtcctg 359 |||||| |||||||| || || || | |||||| ||||||||||| |||||| ||||||| Sbjct: 5511434 tcaacagaggatagatcgggcatcgaccaccgactgcggtggatcgaggtccctgtcctg 5511493 Query: 360 gagagcgttgcccagcagcttttgcatctctgatgcanagacatcatccaggatc 414 || | |||||| || |||||||||| ||||||||| ||||||| ||||||||| Sbjct: 5511494 cagggagttgcctagatgcttttgcatttctgatgcaaagacatcgtccaggatc 5511548
>dbj|AP004812.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0026H03 Length = 151827 Score = 87.7 bits (44), Expect = 3e-14 Identities = 97/115 (84%) Strand = Plus / Plus Query: 300 tcaacaaaggatagaacgagcgtcaatcaccgattgcggtggatccaggtccttgtcctg 359 |||||| |||||||| || || || | |||||| ||||||||||| |||||| ||||||| Sbjct: 56169 tcaacagaggatagatcgggcatcgaccaccgactgcggtggatcgaggtccctgtcctg 56228 Query: 360 gagagcgttgcccagcagcttttgcatctctgatgcanagacatcatccaggatc 414 || | |||||| || |||||||||| ||||||||| ||||||| ||||||||| Sbjct: 56229 cagggagttgcctagatgcttttgcatttctgatgcaaagacatcgtccaggatc 56283
>gb|AC103947.20| Mus musculus chromosome 19, clone RP23-261A21, complete sequence Length = 245390 Score = 46.1 bits (23), Expect = 0.090 Identities = 26/27 (96%) Strand = Plus / Plus Query: 275 cggttcttctcctaccccgccgccctc 301 ||||||||||||| ||||||||||||| Sbjct: 101928 cggttcttctcctcccccgccgccctc 101954
>ref|NM_009551.2| Mus musculus zinc finger, A20 domain containing 2 (Za20d2), mRNA Length = 2835 Score = 46.1 bits (23), Expect = 0.090 Identities = 26/27 (96%) Strand = Plus / Plus Query: 275 cggttcttctcctaccccgccgccctc 301 ||||||||||||| ||||||||||||| Sbjct: 238 cggttcttctcctcccccgccgccctc 264
>dbj|AK131911.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310021N08 product:zinc finger protein 216, full insert sequence Length = 2559 Score = 46.1 bits (23), Expect = 0.090 Identities = 26/27 (96%) Strand = Plus / Plus Query: 275 cggttcttctcctaccccgccgccctc 301 ||||||||||||| ||||||||||||| Sbjct: 232 cggttcttctcctcccccgccgccctc 258
>dbj|AK076397.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732491G13 product:zinc finger protein 216, full insert sequence Length = 2835 Score = 46.1 bits (23), Expect = 0.090 Identities = 26/27 (96%) Strand = Plus / Plus Query: 275 cggttcttctcctaccccgccgccctc 301 ||||||||||||| ||||||||||||| Sbjct: 238 cggttcttctcctcccccgccgccctc 264
>dbj|AK018054.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830475F03 product:zinc finger protein 216, full insert sequence Length = 1589 Score = 46.1 bits (23), Expect = 0.090 Identities = 26/27 (96%) Strand = Plus / Plus Query: 275 cggttcttctcctaccccgccgccctc 301 ||||||||||||| ||||||||||||| Sbjct: 254 cggttcttctcctcccccgccgccctc 280
>gb|BC080270.1| Mus musculus cDNA clone IMAGE:6816490, containing frame-shift errors Length = 2572 Score = 46.1 bits (23), Expect = 0.090 Identities = 26/27 (96%) Strand = Plus / Plus Query: 275 cggttcttctcctaccccgccgccctc 301 ||||||||||||| ||||||||||||| Sbjct: 219 cggttcttctcctcccccgccgccctc 245
>emb|BX545857.1|CJ17683CPS Campylobacter jejuni Length = 36233 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 38 aatatacactccttttaaaatt 59 |||||||||||||||||||||| Sbjct: 16301 aatatacactccttttaaaatt 16322
>emb|AL139078.2|CJ11168X5 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment 5/6 Length = 263335 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 38 aatatacactccttttaaaatt 59 |||||||||||||||||||||| Sbjct: 142353 aatatacactccttttaaaatt 142374
>gb|AC172371.3| Gallus gallus BAC clone CH261-20I24 from chromosome ul, complete sequence Length = 237701 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Minus Query: 258 tccatctgaatgttagacggttcttctcct 287 |||| ||||||||||||| ||||||||||| Sbjct: 184037 tccagctgaatgttagacagttcttctcct 184008
>gb|AY501912.1| Campylobacter jejuni strain TGH 9011 contig013 Tgh012 gene, partial cds Length = 1586 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 39 atatacactccttttaaaatt 59 ||||||||||||||||||||| Sbjct: 1430 atatacactccttttaaaatt 1410
>gb|AC124228.16| Mus musculus chromosome 5, clone RP23-345O14, complete sequence Length = 219244 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 ctaaacaaagcaaaaccgaa 221 |||||||||||||||||||| Sbjct: 193020 ctaaacaaagcaaaaccgaa 193039
>ref|XM_417045.1| PREDICTED: Gallus gallus similar to KIAA0853 protein (LOC418850), mRNA Length = 5480 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 attttcctcttcactttctg 131 |||||||||||||||||||| Sbjct: 656 attttcctcttcactttctg 637
>gb|AC126424.12| Mus musculus chromosome 17, clone RP23-19K10, complete sequence Length = 182696 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 aaagcaaaaccgaagtttaa 227 |||||||||||||||||||| Sbjct: 75743 aaagcaaaaccgaagtttaa 75724
>emb|CR932244.1|CNS0KYIZ PAZ and PIWI domain protein, Paramecium tetraurelia macronuclear gene Length = 2656 Score = 40.1 bits (20), Expect = 5.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 46 ctccttttaaaattccaaatacactctttgga 77 ||||||||||| || ||||| ||||||||||| Sbjct: 840 ctccttttaaattttcaaattcactctttgga 809
>gb|AC103630.10| Mus musculus chromosome 6, clone RP24-358D8, complete sequence Length = 184937 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 aattacacaattttcctctt 122 |||||||||||||||||||| Sbjct: 27874 aattacacaattttcctctt 27855
>gb|AC132102.3| Mus musculus BAC clone RP24-360K9 from chromosome 5, complete sequence Length = 144545 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 ctaaacaaagcaaaaccgaa 221 |||||||||||||||||||| Sbjct: 43105 ctaaacaaagcaaaaccgaa 43124
>gb|AC165163.2| Mus musculus BAC clone RP23-146B12 from chromosome 14, complete sequence Length = 178254 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 caattacacaattttcctct 121 |||||||||||||||||||| Sbjct: 8334 caattacacaattttcctct 8353
>emb|AL593854.6| Human DNA sequence from clone RP11-423B13 on chromosome 6 Contains the 5' part of a novel gene, complete sequence Length = 166869 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 cttttaaaattccaaataca 68 |||||||||||||||||||| Sbjct: 74586 cttttaaaattccaaataca 74567
>emb|AL590491.13| Human DNA sequence from clone RP11-144A16 on chromosome 9 Contains a pseudogene similar to part of contactin associated protein family, a novel pseudogene, the gene for a novel protein similar to chromosome 9 open reading frame 36 (C9orf36), two novel genes, a 6-pyruvoyltetrahydropterin synthase (PTS) pseudogene and a CpG island, complete sequence Length = 174366 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 tccttttaaaattccaaata 66 |||||||||||||||||||| Sbjct: 32420 tccttttaaaattccaaata 32401
>emb|AL513206.6| Human DNA sequence from clone RP11-382F13 on chromosome 1 Contains part of the VAV3 gene for VAV3 oncogene, complete sequence Length = 108124 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 62 aaatacactctttggaaagcacat 85 ||||||| |||||||||||||||| Sbjct: 3719 aaatacattctttggaaagcacat 3742
>emb|AL355478.16| Human DNA sequence from clone RP11-459J23 on chromosome 13 Contains a novel gene and apseudogene similar to part of splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor) (SFRS1), complete sequence Length = 174736 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 acatatttcagatcttagca 253 |||||||||||||||||||| Sbjct: 166054 acatatttcagatcttagca 166073
>emb|AL162576.27| Human DNA sequence from clone RP11-568F20 on chromosome 13 Contains a ubiquitin pseudogene, complete sequence Length = 105783 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 170 acatctctacatgtatacataaat 193 |||| ||||||||||||||||||| Sbjct: 57260 acatatctacatgtatacataaat 57283
>emb|X63727.1|MCMDH1A M.crystallinum mRNA for NADP-malate dehydrogenase Length = 1747 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 296 gccctcaacaaaggatagaacgag 319 ||||||||||||||||| |||||| Sbjct: 554 gccctcaacaaaggatataacgag 531
>gb|AC113137.2| Homo sapiens chromosome 18, clone RP11-622J9, complete sequence Length = 167694 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 tctacatgtatacataaatt 194 |||||||||||||||||||| Sbjct: 119216 tctacatgtatacataaatt 119235
>gb|AC106868.5| Homo sapiens BAC clone RP11-174E22 from 4, complete sequence Length = 136000 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 acaattttcctcttcacttt 128 |||||||||||||||||||| Sbjct: 82848 acaattttcctcttcacttt 82829
>gb|AC154208.2| Mus musculus BAC clone RP24-377L12 from chromosome 16, complete sequence Length = 178006 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 tacactctttggaaagcaca 84 |||||||||||||||||||| Sbjct: 122732 tacactctttggaaagcaca 122713
>emb|CR386368.1| Gallus gallus finished cDNA, clone ChEST236f12 Length = 2149 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 ctctttggaaagcacatctt 88 |||||||||||||||||||| Sbjct: 1822 ctctttggaaagcacatctt 1803
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 aaaattccaaatacactctt 73 |||||||||||||||||||| Sbjct: 2474215 aaaattccaaatacactctt 2474196
>emb|BX005183.9| Zebrafish DNA sequence from clone CH211-136A14 in linkage group 3, complete sequence Length = 168366 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 taaacaaagcaaaaccgaag 222 |||||||||||||||||||| Sbjct: 120238 taaacaaagcaaaaccgaag 120219
>gb|AC097477.2| Homo sapiens BAC clone RP11-112L18 from 4, complete sequence Length = 59853 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 atggagacatctctacatgtatac 187 |||||||| ||||||||||||||| Sbjct: 16658 atggagacctctctacatgtatac 16681
>gb|AC013277.9| Homo sapiens BAC clone RP11-480N9 from 2, complete sequence Length = 98734 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 cttttaaaattccaaataca 68 |||||||||||||||||||| Sbjct: 65044 cttttaaaattccaaataca 65063
>dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0416D03 Length = 157112 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 aaaattccaaatacactctt 73 |||||||||||||||||||| Sbjct: 28636 aaaattccaaatacactctt 28617
>gb|AC167566.1| Mus musculus BAC clone RP24-84B10 from chromosome 14, complete sequence Length = 187792 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 caattacacaattttcctct 121 |||||||||||||||||||| Sbjct: 17099 caattacacaattttcctct 17080
>emb|BX537328.7| Mouse DNA sequence from clone RP23-269E13 on chromosome 4, complete sequence Length = 16634 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 ttagcagagatccatctgaa 267 |||||||||||||||||||| Sbjct: 3807 ttagcagagatccatctgaa 3788
>emb|AL731782.15| Mouse DNA sequence from clone RP23-180G3 on chromosome X, complete sequence Length = 209800 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 aacttttcaaagaaagctgc 35 |||||||||||||||||||| Sbjct: 986 aacttttcaaagaaagctgc 1005
>emb|BX681417.10| Zebrafish DNA sequence from clone DKEY-161L11 in linkage group 2, complete sequence Length = 233760 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 37 aaatatacactccttttaaaattc 60 |||||||||| ||||||||||||| Sbjct: 28786 aaatatacacaccttttaaaattc 28809
>gb|AC114594.15| Mus musculus chromosome 1, clone RP23-81J19, complete sequence Length = 144466 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 tttcagatcttagcagagat 258 |||||||||||||||||||| Sbjct: 96112 tttcagatcttagcagagat 96131
>emb|CT033750.18| Mouse DNA sequence from clone RP23-263M5 on chromosome 17, complete sequence Length = 268616 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 aaagcaaaaccgaagtttaa 227 |||||||||||||||||||| Sbjct: 161275 aaagcaaaaccgaagtttaa 161256
>emb|BX005192.7| Human DNA sequence from clone RP11-211N15 on chromosome 9, complete sequence Length = 163795 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 tccttttaaaattccaaata 66 |||||||||||||||||||| Sbjct: 21933 tccttttaaaattccaaata 21914
>emb|BX001061.7| Mouse DNA sequence from clone RP23-191O17 on chromosome X, complete sequence Length = 3906 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 aacttttcaaagaaagctgc 35 |||||||||||||||||||| Sbjct: 2892 aacttttcaaagaaagctgc 2911 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,562,280 Number of Sequences: 3902068 Number of extensions: 4562280 Number of successful extensions: 113907 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 113762 Number of HSP's gapped (non-prelim): 145 length of query: 414 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 392 effective length of database: 17,147,199,772 effective search space: 6721702310624 effective search space used: 6721702310624 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)