ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PLSX_PROMM (Q7V4F7) Fatty acid/phospholipid synthesis protein plsX 30 3.5
2ABCA3_HUMAN (Q99758) ATP-binding cassette sub-family A member 3 ... 29 6.0
3YWV1_CAEEL (Q11075) Hypothetical protein B0403.1 28 7.9
4MYX2_CROVC (P12029) Myotoxin-2 (Myotoxin II) 28 7.9
5VG12_SHV21 (P24915) Hypothetical gene 12 protein 28 7.9

>PLSX_PROMM (Q7V4F7) Fatty acid/phospholipid synthesis protein plsX|
          Length = 448

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 17/54 (31%), Positives = 32/54 (59%)
 Frame = +3

Query: 144 KPQS*HRKHVWKRKSAQV*HLSW*ACNSCSYSGNVSAILSIRSSGKICAWRGAV 305
           +P++  R  +W R++A V  L   A NS S +GNV+  + + S+G + +  G++
Sbjct: 20  RPRAIRRLVIWYRRNAAVTSLVGSATNSASAAGNVAGTV-VSSAGSVVSNAGSM 72



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>ABCA3_HUMAN (Q99758) ATP-binding cassette sub-family A member 3 (ATP-binding|
           cassette transporter 3) (ATP-binding cassette 3) (ABC-C
           transporter)
          Length = 1704

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
 Frame = -3

Query: 195 LVQIFFSKHVFYVSFGAFIIFISFVVCF----RYS----ACSLCSCM 79
           +V  FFSK     +FG F+ F +++  F    RY+    +  LCSC+
Sbjct: 363 MVSTFFSKANMAAAFGGFLYFFTYIPYFFVAPRYNWMTLSQKLCSCL 409



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>YWV1_CAEEL (Q11075) Hypothetical protein B0403.1|
          Length = 198

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 180 FSKHVFYVSFGAFIIFISFVVCFRYSACSL 91
           F KH+ YVS  AF+     + CFR++  SL
Sbjct: 23  FQKHIEYVSNSAFLKCRQLLRCFRFTNVSL 52



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>MYX2_CROVC (P12029) Myotoxin-2 (Myotoxin II)|
          Length = 43

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 341 HKTSGSFIDSEIYCTPPSADFAR 273
           HK  G     E  CTPPS+DF +
Sbjct: 5   HKKGGHCFPKEKICTPPSSDFGK 27



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>VG12_SHV21 (P24915) Hypothetical gene 12 protein|
          Length = 169

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 135 FISFVVCFRYSACSLCSCMK*WTTMYYWDSPLLVDEKYHSFY 10
           +I   VC     C LC  +    T+  W S +L  E Y++FY
Sbjct: 75  WIVLCVCVSTLLCILCILLDICLTIRLWQSSVLCYEVYNTFY 116


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,924,500
Number of Sequences: 219361
Number of extensions: 1034009
Number of successful extensions: 3191
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3187
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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