Clone Name | rbastl40d01 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_477026.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3193 Score = 287 bits (145), Expect = 1e-74 Identities = 223/249 (89%) Strand = Plus / Minus Query: 179 tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 238 |||||||||||||||| |||||||||||| ||||||||| ||| |||||||||||||||| Sbjct: 2900 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 2841 Query: 239 cagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaaaa 298 | |||||||||||||||||||| ||||| ||||| | ||| ||||| || ||||| |||| Sbjct: 2840 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 2781 Query: 299 ctttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgtttt 358 |||||||||| ||||| |||||||| || |||||||||||||| || ||||||||| || Sbjct: 2780 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaattgcttg 2721 Query: 359 ggacaacatcggttccctcgcaaggctgcatgccaaggatgcttataacagcactcacag 418 |||| ||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||||| Sbjct: 2720 ggaccacatcagttccctcgcagggctgcatgccaaggatgcctatgacagcactcacag 2661 Query: 419 cctcagcca 427 ||||||||| Sbjct: 2660 cctcagcca 2652
>dbj|AK100095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004B12, full insert sequence Length = 3193 Score = 287 bits (145), Expect = 1e-74 Identities = 223/249 (89%) Strand = Plus / Minus Query: 179 tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 238 |||||||||||||||| |||||||||||| ||||||||| ||| |||||||||||||||| Sbjct: 2900 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 2841 Query: 239 cagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaaaa 298 | |||||||||||||||||||| ||||| ||||| | ||| ||||| || ||||| |||| Sbjct: 2840 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 2781 Query: 299 ctttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgtttt 358 |||||||||| ||||| |||||||| || |||||||||||||| || ||||||||| || Sbjct: 2780 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaattgcttg 2721 Query: 359 ggacaacatcggttccctcgcaaggctgcatgccaaggatgcttataacagcactcacag 418 |||| ||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||||| Sbjct: 2720 ggaccacatcagttccctcgcagggctgcatgccaaggatgcctatgacagcactcacag 2661 Query: 419 cctcagcca 427 ||||||||| Sbjct: 2660 cctcagcca 2652
>gb|BT017026.1| Zea mays clone EK07D2312G12.c mRNA sequence Length = 1125 Score = 246 bits (124), Expect = 5e-62 Identities = 226/260 (86%) Strand = Plus / Minus Query: 177 gttttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatct 236 |||||||||||| || |||||||| |||||||||||||||| ||| |||||||| ||||| Sbjct: 960 gttttagccattagcgacaatttcgtggatcctgtcactgatctctggatcatcagatct 901 Query: 237 gacagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaa 296 || || |||||||||||||| || ||||| | || ||||||||||| ||||||||||| Sbjct: 900 aactgccagcttcatggccacctccttcggtgcactaattccaaatgacagtctcaccaa 841 Query: 297 aactttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgtt 356 |||||||| || || || |||||||| || ||||| ||||||||||| || |||||| | Sbjct: 840 gactttcacgttgccaataaacacaccagagagcagacaagtgtgcgaccttgaattgct 781 Query: 357 ttggacaacatcggttccctcgcaaggctgcatgccaaggatgcttataacagcactcac 416 | |||| || || |||||||| ||||||||||||||||||||||||||||||||||| || Sbjct: 780 tgggaccacgtcagttccctcacaaggctgcatgccaaggatgcttataacagcacttac 721 Query: 417 agcctcagccaagttctccc 436 ||||||||||||| |||||| Sbjct: 720 agcctcagccaagctctccc 701
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 210 bits (106), Expect = 3e-51 Identities = 175/198 (88%) Strand = Plus / Minus Query: 179 tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 238 |||||||||||||||| |||||||||||| ||||||||| ||| |||||||||||||||| Sbjct: 5491408 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 5491349 Query: 239 cagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaaaa 298 | |||||||||||||||||||| ||||| ||||| | ||| ||||| || ||||| |||| Sbjct: 5491348 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 5491289 Query: 299 ctttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgtttt 358 |||||||||| ||||| |||||||| || |||||||||||||| || ||||||||| || Sbjct: 5491288 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaattgcttg 5491229 Query: 359 ggacaacatcggttccct 376 |||| ||||| ||||||| Sbjct: 5491228 ggaccacatcagttccct 5491211 Score = 83.8 bits (42), Expect = 4e-13 Identities = 51/54 (94%) Strand = Plus / Minus Query: 374 cctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagcca 427 ||||||| ||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct: 5490995 cctcgcagggctgcatgccaaggatgcctatgacagcactcacagcctcagcca 5490942
>dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0081K20 Length = 117287 Score = 210 bits (106), Expect = 3e-51 Identities = 175/198 (88%) Strand = Plus / Minus Query: 179 tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 238 |||||||||||||||| |||||||||||| ||||||||| ||| |||||||||||||||| Sbjct: 4493 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 4434 Query: 239 cagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaaaa 298 | |||||||||||||||||||| ||||| ||||| | ||| ||||| || ||||| |||| Sbjct: 4433 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 4374 Query: 299 ctttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgtttt 358 |||||||||| ||||| |||||||| || |||||||||||||| || ||||||||| || Sbjct: 4373 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaattgcttg 4314 Query: 359 ggacaacatcggttccct 376 |||| ||||| ||||||| Sbjct: 4313 ggaccacatcagttccct 4296 Score = 83.8 bits (42), Expect = 4e-13 Identities = 51/54 (94%) Strand = Plus / Minus Query: 374 cctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagcca 427 ||||||| ||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct: 4080 cctcgcagggctgcatgccaaggatgcctatgacagcactcacagcctcagcca 4027
>dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0519E02 Length = 139321 Score = 210 bits (106), Expect = 3e-51 Identities = 175/198 (88%) Strand = Plus / Minus Query: 179 tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 238 |||||||||||||||| |||||||||||| ||||||||| ||| |||||||||||||||| Sbjct: 125389 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 125330 Query: 239 cagctagcttcatggccacttctttcggcccgctgattccaaatgatagtctcaccaaaa 298 | |||||||||||||||||||| ||||| ||||| | ||| ||||| || ||||| |||| Sbjct: 125329 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 125270 Query: 299 ctttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgtttt 358 |||||||||| ||||| |||||||| || |||||||||||||| || ||||||||| || Sbjct: 125269 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaattgcttg 125210 Query: 359 ggacaacatcggttccct 376 |||| ||||| ||||||| Sbjct: 125209 ggaccacatcagttccct 125192 Score = 83.8 bits (42), Expect = 4e-13 Identities = 51/54 (94%) Strand = Plus / Minus Query: 374 cctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagcca 427 ||||||| ||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct: 124976 cctcgcagggctgcatgccaaggatgcctatgacagcactcacagcctcagcca 124923
>gb|BT017505.1| Zea mays clone EL01N0414H09.c mRNA sequence Length = 886 Score = 188 bits (95), Expect = 1e-44 Identities = 206/243 (84%) Strand = Plus / Minus Query: 194 caatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttcatgg 253 ||||||| |||||| ||||||||| ||| |||||||| ||||| || || || ||||||| Sbjct: 679 caatttcgtggatcttgtcactgagctctggatcatcagatctaactgccaggttcatgg 620 Query: 254 ccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacattaccga 313 |||| || ||||| | ||||||||||| || ||||||||||| |||||||| || || | Sbjct: 619 ccacctccttcggggcactgattccaaaggaaagtctcaccaagactttcacgttgccaa 560 Query: 314 tgaacacacctgaaagcaggcaagtgtgcgatctcgaattgttttggacaacatcggttc 373 | | ||| || || ||||| ||||||||||| || |||||| || |||| || || || | Sbjct: 559 taaccaccccagagagcagacaagtgtgcgaccttgaattgcttgggaccacgtcagtcc 500 Query: 374 cctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagccaagttct 433 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| Sbjct: 499 cctcacaaggctgcatgccaaggatgcttataacagcacttacagcctcagccaagctct 440 Query: 434 ccc 436 ||| Sbjct: 439 ccc 437
>ref|NM_187618.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2481 Score = 168 bits (85), Expect = 1e-38 Identities = 205/245 (83%) Strand = Plus / Minus Query: 190 gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 249 |||||||| || |||||| |||||||||| || ||||||||||| ||||| || |||||| Sbjct: 2471 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 2412 Query: 250 atggccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacatta 309 || |||||||| || |||||||| | |||||| ||||| || || | ||| || | | Sbjct: 2411 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 2352 Query: 310 ccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgttttggacaacatcg 369 |||||||||||||| || |||||||||||||||||||| | ||| ||| | ||||| || Sbjct: 2351 ccgatgaacacaccagacagcaggcaagtgtgcgatcttgcattctttggtacaacctca 2292 Query: 370 gttccctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagccaag 429 || ||||| ||||||||||| |||||||| || || |||||||||||||||||||||||| Sbjct: 2291 gtgccctcacaaggctgcataccaaggatactaatgacagcactcacagcctcagccaag 2232 Query: 430 ttctc 434 |||| Sbjct: 2231 ctctc 2227
>dbj|AK068454.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155G01, full insert sequence Length = 3214 Score = 168 bits (85), Expect = 1e-38 Identities = 205/245 (83%) Strand = Plus / Minus Query: 190 gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 249 |||||||| || |||||| |||||||||| || ||||||||||| ||||| || |||||| Sbjct: 2825 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 2766 Query: 250 atggccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacatta 309 || |||||||| || |||||||| | |||||| ||||| || || | ||| || | | Sbjct: 2765 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 2706 Query: 310 ccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaattgttttggacaacatcg 369 |||||||||||||| || |||||||||||||||||||| | ||| ||| | ||||| || Sbjct: 2705 ccgatgaacacaccagacagcaggcaagtgtgcgatcttgcattctttggtacaacctca 2646 Query: 370 gttccctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagccaag 429 || ||||| ||||||||||| |||||||| || || |||||||||||||||||||||||| Sbjct: 2645 gtgccctcacaaggctgcataccaaggatactaatgacagcactcacagcctcagccaag 2586 Query: 430 ttctc 434 |||| Sbjct: 2585 ctctc 2581
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 107 bits (54), Expect = 3e-20 Identities = 132/158 (83%) Strand = Plus / Minus Query: 190 gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 249 |||||||| || |||||| |||||||||| || ||||||||||| ||||| || |||||| Sbjct: 6651732 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 6651673 Query: 250 atggccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacatta 309 || |||||||| || |||||||| | |||||| ||||| || || | ||| || | | Sbjct: 6651672 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 6651613 Query: 310 ccgatgaacacacctgaaagcaggcaagtgtgcgatct 347 |||||||||||||| || |||||||||||||||||||| Sbjct: 6651612 ccgatgaacacaccagacagcaggcaagtgtgcgatct 6651575 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 374 cctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagccaagttct 433 |||| ||||||||||| |||||||| || || |||||||||||||||||||||||| ||| Sbjct: 6651423 cctcacaaggctgcataccaaggatactaatgacagcactcacagcctcagccaagctct 6651364 Query: 434 c 434 | Sbjct: 6651363 c 6651363
>gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1626B05, complete sequence Length = 127946 Score = 107 bits (54), Expect = 3e-20 Identities = 132/158 (83%) Strand = Plus / Minus Query: 190 gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 249 |||||||| || |||||| |||||||||| || ||||||||||| ||||| || |||||| Sbjct: 37280 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 37221 Query: 250 atggccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacatta 309 || |||||||| || |||||||| | |||||| ||||| || || | ||| || | | Sbjct: 37220 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 37161 Query: 310 ccgatgaacacacctgaaagcaggcaagtgtgcgatct 347 |||||||||||||| || |||||||||||||||||||| Sbjct: 37160 ccgatgaacacaccagacagcaggcaagtgtgcgatct 37123 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 374 cctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagccaagttct 433 |||| ||||||||||| |||||||| || || |||||||||||||||||||||||| ||| Sbjct: 36971 cctcacaaggctgcataccaaggatactaatgacagcactcacagcctcagccaagctct 36912 Query: 434 c 434 | Sbjct: 36911 c 36911
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 107 bits (54), Expect = 3e-20 Identities = 132/158 (83%) Strand = Plus / Minus Query: 190 gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 249 |||||||| || |||||| |||||||||| || ||||||||||| ||||| || |||||| Sbjct: 6650945 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 6650886 Query: 250 atggccacttctttcggcccgctgattccaaatgatagtctcaccaaaactttcacatta 309 || |||||||| || |||||||| | |||||| ||||| || || | ||| || | | Sbjct: 6650885 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 6650826 Query: 310 ccgatgaacacacctgaaagcaggcaagtgtgcgatct 347 |||||||||||||| || |||||||||||||||||||| Sbjct: 6650825 ccgatgaacacaccagacagcaggcaagtgtgcgatct 6650788 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 374 cctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagccaagttct 433 |||| ||||||||||| |||||||| || || |||||||||||||||||||||||| ||| Sbjct: 6650636 cctcacaaggctgcataccaaggatactaatgacagcactcacagcctcagccaagctct 6650577 Query: 434 c 434 | Sbjct: 6650576 c 6650576
>gb|AY389774.1| Hyacinthus orientalis coatomer protein gamma subunit mRNA, partial cds Length = 871 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 361 acaacatcggttccctcgcaaggctgcatgccaaggatgcttataacagcactcacagcc 420 ||||| || |||||||||||||||||||||||||||||| | | |||||| ||||||| Sbjct: 736 acaacttcagttccctcgcaaggctgcatgccaaggatgttaacgacagcattcacagcg 677 Query: 421 tcagccaagttctc 434 ||| ||||| |||| Sbjct: 676 tcaaccaagctctc 663
>gb|AY111369.1| Zea mays CL858_1 mRNA sequence Length = 1437 Score = 63.9 bits (32), Expect = 4e-07 Identities = 77/92 (83%) Strand = Plus / Minus Query: 193 acaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttcatg 252 ||||| ||||| ||| | |||||||| || || ||||||||||| ||||||| ||||| Sbjct: 1194 acaatctcatgaatcttatcactgacttcagggtcatctgatctcacagctaatttcatt 1135 Query: 253 gccacttctttcggcccgctgattccaaatga 284 |||||||| || |||||||| | ||||||||| Sbjct: 1134 gccacttcgttgggcccgctcagtccaaatga 1103 Score = 40.1 bits (20), Expect = 5.9 Identities = 47/56 (83%) Strand = Plus / Minus Query: 373 ccctcgcaaggctgcatgccaaggatgcttataacagcactcacagcctcagccaa 428 ||||| || |||||||| |||||||| | || |||||| | |||||||||||||| Sbjct: 1014 ccctcacacggctgcattccaaggatattaatgacagcattgacagcctcagccaa 959
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 129 tggaaagccaaaacaacaaaa 149 ||||||||||||||||||||| Sbjct: 21750132 tggaaagccaaaacaacaaaa 21750112
>dbj|AP004665.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0429B05 Length = 155024 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 129 tggaaagccaaaacaacaaaa 149 ||||||||||||||||||||| Sbjct: 29715 tggaaagccaaaacaacaaaa 29695
>dbj|AP004564.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0479C12 Length = 136799 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 129 tggaaagccaaaacaacaaaa 149 ||||||||||||||||||||| Sbjct: 117702 tggaaagccaaaacaacaaaa 117682
>dbj|AP006864.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT18I21, TM1144, complete sequence Length = 135217 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 138 aaaacaacaaaaaggtcaaccaaaa 162 |||||||||||||||||||| |||| Sbjct: 66692 aaaacaacaaaaaggtcaacaaaaa 66716
>gb|AC129981.9| Mus musculus chromosome 5, clone RP23-114I13, complete sequence Length = 198469 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 caaatgatagtctcaccaaa 297 |||||||||||||||||||| Sbjct: 134144 caaatgatagtctcaccaaa 134163
>gb|AY544051.1| Salmo salar clone Rsa473 microsatellite sequence Length = 1015 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 ccctcgcaaggctgcatgcc 392 |||||||||||||||||||| Sbjct: 252 ccctcgcaaggctgcatgcc 271
>gb|AC116324.6| Mus musculus BAC clone RP23-282P1 from 16, complete sequence Length = 200774 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 gtctcaccaaaactttcaca 306 |||||||||||||||||||| Sbjct: 141172 gtctcaccaaaactttcaca 141153
>gb|AC126722.7| Rattus norvegicus 4 BAC CH230-5L13 (Children's Hospital Oakland Research Institute) complete sequence Length = 217690 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 aaaacaacaaaaaggtcaac 157 |||||||||||||||||||| Sbjct: 30996 aaaacaacaaaaaggtcaac 31015
>emb|BX321857.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 2/10 Length = 313050 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 aagccaaaacaacaaaaagg 152 |||||||||||||||||||| Sbjct: 565 aagccaaaacaacaaaaagg 584
>emb|BX294445.10| Zebrafish DNA sequence from clone DKEY-265K11 in linkage group 1, complete sequence Length = 159780 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 acacacctgaaagcaggcaa 336 |||||||||||||||||||| Sbjct: 98857 acacacctgaaagcaggcaa 98876
>gb|BC091386.1| Rattus norvegicus hypothetical protein LOC310665, mRNA (cDNA clone MGC:109471 IMAGE:7321358), complete cds Length = 2054 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 aacagcactcacagcctcag 424 |||||||||||||||||||| Sbjct: 950 aacagcactcacagcctcag 931
>gb|AC099065.2| Homo sapiens chromosome 1 clone RP11-105I12, complete sequence Length = 181253 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 128 atggaaagccaaaacaacaaaaaggtcaaccaaaaa 163 ||||||||| |||| || |||||||||||| ||||| Sbjct: 156807 atggaaagcaaaaaaaaaaaaaaggtcaactaaaaa 156842
>gb|AC008829.7| Homo sapiens chromosome 5 clone CTD-2140K22, complete sequence Length = 159145 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 caaccaaaaattgttttact 20 |||||||||||||||||||| Sbjct: 143015 caaccaaaaattgttttact 143034
>ref|NM_001025118.1| Rattus norvegicus hypothetical protein LOC310665 (LOC310665), mRNA Length = 2054 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 aacagcactcacagcctcag 424 |||||||||||||||||||| Sbjct: 950 aacagcactcacagcctcag 931
>gb|DQ067593.1| Cocksfoot streak virus isolate UK-1-04 GHCP619C HC-Pro protein (HC-Pro) gene, partial cds Length = 1371 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 gcgatctcgaattgttttgg 360 |||||||||||||||||||| Sbjct: 1110 gcgatctcgaattgttttgg 1091
>gb|DQ067592.1| Cocksfoot streak virus isolate UK-1-04 GHCP619B HC-Pro protein (HC-Pro) gene, partial cds Length = 1371 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 gcgatctcgaattgttttgg 360 |||||||||||||||||||| Sbjct: 1110 gcgatctcgaattgttttgg 1091
>gb|DQ067591.1| Cocksfoot streak virus isolate UK-1-04 GHCP619A HC-Pro protein (HC-Pro) gene, partial cds Length = 1371 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 gcgatctcgaattgttttgg 360 |||||||||||||||||||| Sbjct: 1110 gcgatctcgaattgttttgg 1091
>dbj|AK031002.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830485N12 product:similar to Protein C20orf24 (Rab5-interacting protein) (RIP5) (PNAS-11) [Homo sapiens], full insert sequence Length = 2005 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 ccaaaacaacaaaaaggtca 155 |||||||||||||||||||| Sbjct: 906 ccaaaacaacaaaaaggtca 887
>emb|AL929238.22| Mouse DNA sequence from clone RP23-480I16 on chromosome 2, complete sequence Length = 174226 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 agaaaaccaacttacacata 84 |||||||||||||||||||| Sbjct: 14949 agaaaaccaacttacacata 14968
>emb|BX248130.8| Zebrafish DNA sequence from clone CH211-236E5 in linkage group 1, complete sequence Length = 183058 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 acacacctgaaagcaggcaa 336 |||||||||||||||||||| Sbjct: 145464 acacacctgaaagcaggcaa 145483
>gb|AC068129.6| Homo sapiens BAC clone RP11-619F9 from 2, complete sequence Length = 150646 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 aacaacaaaaaggtcaacca 159 |||||||||||||||||||| Sbjct: 44400 aacaacaaaaaggtcaacca 44419
>gb|AC016622.5|AC016622 Homo sapiens chromosome 5 clone CTD-2343F18, complete sequence Length = 110085 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 caaccaaaaattgttttact 20 |||||||||||||||||||| Sbjct: 74126 caaccaaaaattgttttact 74107
>gb|AC008833.5|AC008833 Homo sapiens chromosome 5 clone CTD-2146O16, complete sequence Length = 141894 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 caaccaaaaattgttttact 20 |||||||||||||||||||| Sbjct: 98121 caaccaaaaattgttttact 98102
>emb|BX005450.9| Zebrafish DNA sequence from clone CH211-150O23, complete sequence Length = 164218 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ataattaatcgaaatccctt 114 |||||||||||||||||||| Sbjct: 160378 ataattaatcgaaatccctt 160359
>emb|BX119907.8| Zebrafish DNA sequence from clone CH211-208D14 in linkage group 6, complete sequence Length = 181060 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 aaaacaacaaaaaggtcaac 157 |||||||||||||||||||| Sbjct: 24478 aaaacaacaaaaaggtcaac 24459
>emb|AL806515.7| Mouse DNA sequence from clone RP23-434M18 on chromosome X, complete sequence Length = 125394 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 caagaatgatgctgcaacaa 48 |||||||||||||||||||| Sbjct: 115520 caagaatgatgctgcaacaa 115539
>emb|CR854912.18| Zebrafish DNA sequence from clone DKEY-39O12 in linkage group 6, complete sequence Length = 170067 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 aaaacaacaaaaaggtcaac 157 |||||||||||||||||||| Sbjct: 11246 aaaacaacaaaaaggtcaac 11265
>emb|BX914207.15| Zebrafish DNA sequence from clone DKEY-158P11 in linkage group 4, complete sequence Length = 92140 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 ataacagcactcacagcctc 422 |||||||||||||||||||| Sbjct: 74498 ataacagcactcacagcctc 74517
>emb|CT025771.7| Zebrafish DNA sequence from clone DKEY-20I10 in linkage group 13, complete sequence Length = 190607 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 ataacagcactcacagcctc 422 |||||||||||||||||||| Sbjct: 25665 ataacagcactcacagcctc 25684
>emb|AL935150.10| Mouse DNA sequence from clone RP24-482A24 on chromosome 2, complete sequence Length = 163240 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 ccaaaacaacaaaaaggtca 155 |||||||||||||||||||| Sbjct: 91724 ccaaaacaacaaaaaggtca 91705
>emb|AL845468.4| Mouse DNA sequence from clone RP23-67E6 on chromosome 2, complete sequence Length = 217609 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 caagaatgatgctgcaacaa 48 |||||||||||||||||||| Sbjct: 48422 caagaatgatgctgcaacaa 48441 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,637,864 Number of Sequences: 3902068 Number of extensions: 4637864 Number of successful extensions: 89048 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88849 Number of HSP's gapped (non-prelim): 199 length of query: 436 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 414 effective length of database: 17,147,199,772 effective search space: 7098940705608 effective search space used: 7098940705608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)