ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl40c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TACT_HUMAN (P40200) T-cell surface protein tactile precursor (CD... 29 3.3
2MTH1_HAEIN (P20590) Modification methylase HinfI (EC 2.1.1.72) (... 28 4.3
3THBG_PIG (Q9TT35) Thyroxine-binding globulin precursor (T4-bindi... 28 5.6
4JD2AB_XENLA (Q5HZN1) JmjC domain-containing histone demethylatio... 28 5.6
5TGM5_HUMAN (O43548) Protein-glutamine gamma-glutamyltransferase ... 28 7.3
6R1AB_CVHSA (P59641) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [... 28 7.3
7PLK4_MOUSE (Q64702) Serine/threonine-protein kinase PLK4 (EC 2.7... 28 7.3
8CDYL_MOUSE (Q9WTK2) Chromodomain Y-like protein (CDY-like) 27 9.5
9194K_TRVSY (P05080) Putative 194 kDa protein (Putative replicase... 27 9.5
10HEX_VIBVU (Q04786) Beta-hexosaminidase (EC 3.2.1.52) (N-acetyl-b... 27 9.5
11MURD_LEPIN (Q8F7V4) UDP-N-acetylmuramoylalanine--D-glutamate lig... 27 9.5
12MURD_LEPIC (Q72NP4) UDP-N-acetylmuramoylalanine--D-glutamate lig... 27 9.5
13ZDH20_HUMAN (Q5W0Z9) Probable palmitoyltransferase ZDHHC20 (EC 2... 27 9.5

>TACT_HUMAN (P40200) T-cell surface protein tactile precursor (CD96 antigen)|
          Length = 569

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 111 NFPWRSAPPQSEVSLCTVPTRAVGESPS*AHST 209
           N+PW S+   ++ S+  +P+     SPS A ST
Sbjct: 428 NYPWTSSGTDTKKSVSRIPSETYSSSPSGAGST 460



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>MTH1_HAEIN (P20590) Modification methylase HinfI (EC 2.1.1.72)|
           (Adenine-specific methyltransferase HinfI) (M.HinfI)
          Length = 359

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 147 VSLCTVPTRAVGESPS*AHSTNRSKTIIYTPKQESPSMNDIM 272
           +SLCT   R   E    AHST + ++++Y     S   ND++
Sbjct: 175 LSLCTGKERIKDEEGKKAHSTQKPESLLYKVILSSSKPNDVV 216



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>THBG_PIG (Q9TT35) Thyroxine-binding globulin precursor (T4-binding globulin)|
           (Serpin A7)
          Length = 412

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query: 191 QLSSLYKPQQNDNLHPQTGISEHE*YHAF--FATAKPVMNSLTSPLARSSAV 340
           +++S   PQQN  LH  + I+    ++ +  FA   P  N   SP++ S+A+
Sbjct: 25  KVTSCLSPQQNATLHKMSSINADFAFNLYRRFAVETPDQNIFFSPVSISAAL 76



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>JD2AB_XENLA (Q5HZN1) JmjC domain-containing histone demethylation protein 2A-B|
           (EC 1.14.11.-) (Jumonji domain-containing protein 1A-B)
          Length = 1334

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 164 ADPSSW*ISQLSSLYKPQQNDNLHPQTGISEHE*YHAFFATAKPV 298
           + P SW  +   ++   +  DNL   T  SEH+   +F +  KPV
Sbjct: 831 SSPLSWLTNFPQTIVNKENKDNLFASTSKSEHKPLPSFASFGKPV 875



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>TGM5_HUMAN (O43548) Protein-glutamine gamma-glutamyltransferase 5 (EC|
           2.3.2.13) (Transglutaminase-5) (TGase 5)
           (Transglutaminase X) (TGase X) (TGX) (TG(X))
          Length = 719

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = +3

Query: 75  TKVLFVRFSNYSNFPW-----RSAPPQSEVSLCTVPTRAVG 182
           T+ +F    ++S  PW      +    +EVSLC  PT AVG
Sbjct: 72  TRAVFSLARHHSPSPWIAWLETNGATSTEVSLCAPPTAAVG 112



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>R1AB_CVHSA (P59641) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:|
            Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains:
            Leader protein; p65 homolog; NSP1 (EC 3.4.22.-)
            (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC
            3.4.22.-) (3CL-PRO) (3
          Length = 7073

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 21/67 (31%), Positives = 27/67 (40%)
 Frame = +1

Query: 112  TFHGDQLLHKARSVFVPCRPEQLVNLPAKLTLQTAAKR*STPPNRNLRA*MISCLFRNGE 291
            T  GD     A SVF  C   Q V       L T   + +    RNL+  +  CL+RN +
Sbjct: 5049 TSSGDATTAYANSVFNIC---QAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRD 5105

Query: 292  AGDELPD 312
               E  D
Sbjct: 5106 VDHEFVD 5112



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>PLK4_MOUSE (Q64702) Serine/threonine-protein kinase PLK4 (EC 2.7.11.21)|
           (Polo-like kinase 4) (PLK-4) (Serine/threonine-protein
           kinase Sak) (Serine/threonine-protein kinase 18)
          Length = 925

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
 Frame = +2

Query: 80  SPVRQVQQLLKLSMEISSSTKRGQSLYRADPSS--W*ISQLSSL-------YKPQ---QN 223
           SP R  Q    L   + ++    ++   AD S+    + QLS++       +KP+   Q 
Sbjct: 463 SPNRDFQDYPDLQDTLRNAWTDTRASKNADTSANVHAVKQLSAMKYMSAHHHKPEVMPQE 522

Query: 224 DNLHPQTGISEHE*YHAFFATAKPVMNSLTSPL 322
             LHP +  S++    +     KP + S+TSPL
Sbjct: 523 PGLHPHSEQSKNRSMESTLGYQKPTLRSITSPL 555



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>CDYL_MOUSE (Q9WTK2) Chromodomain Y-like protein (CDY-like)|
          Length = 593

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +3

Query: 126 SAPPQSEVSLCTVPTRAVGESPS*AHSTNRSKTI---IYTPKQESPSMND 266
           S P   E  LCT+P +A  E P+  ++  ++  +   +  P Q SP++ D
Sbjct: 6   SQPNSQEAQLCTLPEKA--EQPTDDNTCQQNNVVPATVSEPDQASPAIQD 53



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>194K_TRVSY (P05080) Putative 194 kDa protein (Putative replicase) [Contains:|
           134 kDa protein]
          Length = 1707

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 51  LPQLKDDATKVLFVRFSNYSNFPWRSAPP 137
           L Q K+ A + L  +FSNYS    R++PP
Sbjct: 613 LQQKKEIADEFLSAKFSNYSGSSVRTSPP 641



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>HEX_VIBVU (Q04786) Beta-hexosaminidase (EC 3.2.1.52)|
           (N-acetyl-beta-glucosaminidase)
           (Beta-N-acetylhexosaminidase) (Chitobiase)
          Length = 847

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 7   KVFSFLPNNIIQYINCLS*RMTQRKSCSSGSAT 105
           KVFSF+P N+   +  ++ RM  + S ++G  T
Sbjct: 648 KVFSFMPENVPANVEWMTDRMGAKISATTGEKT 680



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>MURD_LEPIN (Q8F7V4) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 463

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
 Frame = -3

Query: 293 ASPLRKRHDIIHARRFLFGGVDYRFAAVCRVSLAGRFTNCS---GRHGTKTDLALWRS*S 123
           A  +  + + I  R  LF G+ +RF  +    L   F N S     H     +A W++  
Sbjct: 278 AEEIGGKPESIQTRIPLFRGLPHRFQ-IAGEKLGISFINDSKSTNLHSMLAGMATWKNID 336

Query: 122 PWKV*VVAEPDEQDFRCVILQLRQLIYCIMLFGRKEKT 9
              + +   P ++D + +   L + I C++LFG    T
Sbjct: 337 QTCLILGGRPKQEDLKPLYNFLIRGIGCVVLFGEARAT 374



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>MURD_LEPIC (Q72NP4) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 463

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
 Frame = -3

Query: 293 ASPLRKRHDIIHARRFLFGGVDYRFAAVCRVSLAGRFTNCS---GRHGTKTDLALWRS*S 123
           A  +  + + I  R  LF G+ +RF  +    L   F N S     H     +A W++  
Sbjct: 278 AEEIGGKPESIQTRIPLFRGLPHRFQ-IAGEKLGISFINDSKSTNLHSMLAGMATWKNID 336

Query: 122 PWKV*VVAEPDEQDFRCVILQLRQLIYCIMLFGRKEKT 9
              + +   P ++D + +   L + I C++LFG    T
Sbjct: 337 QTCLILGGRPKQEDLKPLYNFLIKGIGCVVLFGEARAT 374



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>ZDH20_HUMAN (Q5W0Z9) Probable palmitoyltransferase ZDHHC20 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 20) (DHHC-20)
          Length = 365

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 156 CTVPTRAVGESPS*AHSTNRSKTIIYTPKQESPSMNDIMPFSQRRSR 296
           C+ PTR VG  P  A  TN+++   Y     S     I P S+ ++R
Sbjct: 290 CSFPTRLVGMDPEQASVTNQNE---YARSSGSNQPFPIKPLSESKNR 333


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,944,839
Number of Sequences: 219361
Number of extensions: 978248
Number of successful extensions: 2186
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2186
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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